1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattggattggatgtttatgagtatattcttttcgttttcttttttttttataaaaaaaaacaaatcttgaaactgaaactaatgggactaaggt...
species | Vitis vinifera |
transcript | Vv13s0019g04410.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|161711225|gb|FC060729.1|FC060729
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110713284|gb|EE089069.1|EE089069
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|161714040|gb|FC064115.1|FC064115
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: TATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110711718|gb|EE088519.1|EE088519
genomic: TATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110719675|gb|EE095009.1|EE095009
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110719112|gb|EE096713.1|EE096713
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|161721129|gb|FC070378.1|FC070378
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110711029|gb|EE087758.1|EE087758
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|161714635|gb|FC063589.1|FC063589
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCGTGCTTTTCCAEST: gi|161721124|gb|FC071011.1|FC071011
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110713562|gb|EE089592.1|EE089592
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110713722|gb|EE089892.1|EE089892
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110710949|gb|EE087590.1|EE087590
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGGCTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110718496|gb|EE095393.1|EE095393
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|110720314|gb|EE096130.1|EE096130
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCAEST: gi|37190011|gb|CF609360.1|CF609360
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
EST: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAG GTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
genomic: ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattg ... tcctctttagGTTGAGAATACTGGGGCATCACCTGCTTCTGAAATTCTTCTTGCTTTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGACTTGACTTCGCATATCATTAAGGTTTTCCTGACTCTGAAGgtactgattggattggatgtttatgagtatattcttttcgttttcttttttttttataaaaaaaaacaaatcttgaaactgaaactaatgggactaaggt
- - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta