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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGCCTTTCTCTTGCCATTGTTGATATATATGCACTTTTAGTGAGGCGCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaatatttgcatggtattttaacaaaattgagcagttacattaataatgtagacatgtcttgggtcttggcgggcttctgttatgttgtcacat...

Basic information

species Vitis vinifera
transcript Vv13s0019g04330.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110392468|gb|EC957912.1|EC957912
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|18459141|gb|BM437419.1|BM437419
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|22012661|gb|BQ797695.1|BQ797695
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|30321178|gb|CD004440.1|CD004440
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|71890446|gb|DT039501.1|DT039501
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|32269001|gb|CD718160.1|CD718160
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|32248058|gb|CD713877.1|CD713877
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|22012872|gb|BQ797906.1|BQ797906
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|110412553|gb|EC978306.1|EC978306
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|110386673|gb|EC951289.1|EC951289
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|30320649|gb|CD003911.1|CD003911
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|22014253|gb|BQ799287.1|BQ799287
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|30252183|gb|CB969734.1|CB969734
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|83275125|gb|DV939221.1|DV939221
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
EST: gi|28968424|gb|CB347457.1|CB347457
EST:     GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGG                         ATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA
genomic: GCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaat ... gaatgtgcagATTACTTCGACACTTACATTTGCTGCAGCCTGTGCATCTGCTGGTATAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGAGCCTTTCTCTTGCCATTGTTGATATATATGCACTTTTAGTGAGGCGCTGCTTGCGAAATTCCAGAATTGTCAGCTTATTTACAGTGGGTGATGGGgtaagggaatatttgcatggtattttaacaaaattgagcagttacattaataatgtagacatgtcttgggtcttggcgggcttctgttatgttgtcacat

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa