Sequence
atgc intronic sequence ATGC exonic sequenceTTGGATGCTGTGCTTTCAGAAACACGAGAAGATCCGAAACCGATTACCCATACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactataacatttgcatttgtggtaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G31900.1 (Glycine max), 5'ss of exon 2
TTGGATGCTGTGCTTTCAGAAACACGAGAAGATCCGAAACCGATTACCCATACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactataacatttgcatttgtggtaaacag
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TTGGGTGCTGTGCTTTCAGAAACACAAGAAGAGCTGAAACGGACTATCCCTATGCTGAAAACCGGATGACCAAAGTCCGACCCAGATGGGATTACCATTGgtgagtccaaaattaacaaaataaaatttttcaattcatttcccttgtaagaaaatcacat-ataagaattattttatactgaaat-tgtgtagtcatgggt-----
upper sequence: Vv13s0019g04050.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA10G35650.1 (Glycine max), 5'ss of exon 2
TTGGATGCTGTGCTTTCAGAAACACGAGAAGATCCGAAACCGATTACCCATACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactat-aacatttgcatttgtggtaaacag
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TTGGGTGCTGTGCTTTCAGAAACACAAGAAGAGCTGAAACGGATTATCCCTATGGTGAAAACCGCATGACCAAAGTCCGACCTAGATGGGATTACCATTGgtgagtccaaaatttacaaaatcatattattaattcatttcccttatatgaaaatcatgcctatta-attcaatataatttatcgatttttataataattg-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110410684|gb|EC976375.1|EC976375EST: TACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTG GTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAG
genomic: TACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgaca ... tggtaaacagGTGGAGATGGTGGTACGACAGAAAAAACCAGCTTTACTAGGCAAGAGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGATGCTGTGCTTTCAGAAACACGAGAAGATCCGAAACCGATTACCCATACGGCGAAAACCGGATGTCCAAAGTCCGACCCAGATGGGATTTCTACTGgtatgtgacatttatccttgatccaacccgctatcccctgctgggccagcccagttgacctcattggattcagcttaaactataacatttgcatttgtggtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG