Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAGAACTTTCCCTGTTCCATTATCTGAGAAGGATGGTTTTGATTCTTCTGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaattttgttgaaatcatctaattctgtttctgagacttagtgagggtatctagatgtgctgaggtacctgcaagttcatataatgtgaaagaa...

Basic information

species Vitis vinifera
transcript Vv13s0019g03960.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352782197|gb|FQ470099.1|FQ470099
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|351029666|gb|FQ427506.1|FQ427506
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|351025048|gb|FQ433465.1|FQ433465
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|294965935|gb|GW839274.1|GW839274
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAAGCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|110711711|gb|EE088504.1|EE088504
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCCGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|352769260|gb|FQ471409.1|FQ471409
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|110713047|gb|EE088636.1|EE088636
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|351023970|gb|FQ423393.1|FQ423393
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|30254970|gb|CB971417.1|CB971417
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|351029504|gb|FQ436898.1|FQ436898
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|110721939|gb|EE097735.1|EE097735
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
EST: gi|110711601|gb|EE088266.1|EE088266
EST:     TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAG                         CCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT
genomic: TGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaat ... catcttgcagCCACTGAAGGAGGCTCAGATGCACCAACAACCCATCTGAAGGATGTATCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTAGAACTTTCCCTGTTCCATTATCTGAGAAGGATGGTTTTGATTCTTCTGGAGAATCACCTAAAGTAACAAATAAAGGCTGCTCGGAGCCTGGAGAAGgtgcattaattttgttgaaatcatctaattctgtttctgagacttagtgagggtatctagatgtgctgaggtacctgcaagttcatataatgtgaaagaa

- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa