1 5' 3' | 2 5' 3' |
TCAAGGCTCGTCCGCCAAAACCCAGGATCCGCAAATTCTATGAAGGTGGTTTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAGgtaccactaaatccttcttgaaagaaaattatattgtaagcaatcacattctagcatatttaattttagccgtctgttataattaaattgctgttctctg...
species | Vitis vinifera |
transcript | Vv13s0019g03880.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAG GGAGAATGCGACTGCAGACAAGGTGAAGGAAGCACATAGGAGGGTCATGGTEST: gi|71869973|gb|DT019028.1|DT019028
genomic: TTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAGgtaccactaa ... ggtttgatagGGAGAATGCGACTGCAGACAAGGTGAAGGAAGCACATAGGAGGGTCATGGT
EST: TTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAG GGAGAATGCGACTGCAGACAAGGTGAAGGAAGCACATAGGAGGGTCATGGT
genomic: TTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAGgtaccactaa ... ggtttgatagGGAGAATGCGACTGCAGACAAGGTGAAGGAAGCACATAGGAGGGTCATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGGCTCGTCCGCCAAAACCCAGGATCCGCAAATTCTATGAAGGTGGTTTCCAGCCTACAATGACAAAAAGGGAAGCAGCTCTTATTCTTGGCATTAGgtaccactaaatccttcttgaaagaaaattatattgtaagcaatcacattctagcatatttaattttagccgtctgttataattaaattgctgttctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa