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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattattccatgtcatctatag

Basic information

species Vitis vinifera
transcript Vv13s0019g02710.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G03610.1 (Glycine max), 5'ss of exon 1
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagt-taatt---agtcttttttttttggctttttaattgcaattcatttca--tttccattattccatgtcatctatag------------------------------------------------
||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| || ||||| || || ||||| |||||| || |||||||||  ||  |   | | | |  |  |  | |||||   |  || |||  |||| || | |  | ||||||  ||  |  |||  | | |||  |      | ||                                                 
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATCTCTAATGCCATTACTAATCTGTGCGgtatggtttctctcttgcaggcactgacataggctcacgatgtaattgagaaactgtttagtttgtctatgt--tggcaattagttcaaatttttgaattttctgttctggttttaaatttgagttttataacttattcaaatttggattatttgcaacgtgtag

upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G34690.1 (Glycine max), 5'ss of exon 1
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctca-----ttctaaggctttgtttttcagttaattagtc-ttttttttttggctttttaattgcaattcatttca--tttccattattccatgtcatctatag------------------------------------------------
||||||||| | ||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||| || || ||||| |||||| || ||||  |||  ||     ||  |  |  |  || |  | || |  ||   |||  ||  |   | | |  | |||| |  ||  |  |||  | | |||  |      | ||                                                 
GAGAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGGGTTTGCACTGCTTTGGCCATTTCTAATGCCATTACTAATCTCTGCGgtatgctttccatcttgcaaacacttgcataggctcattatgtaattgagaagctgtttacttagtttgtctatgttggcaaatagttcaaaattttgaattttctgttctggttttaaatttgagttttataacttattcaagtttggattatttgcaacttgtag

upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G41980.1 (Glycine max), 5'ss of exon 2
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcat----tctaaggctttg-------tttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattattccatgtcatctatag------------------
|| |||||| | ||| |  ||||||| ||||| |||||||| ||||| ||||| || || |  ||||||||||| || ||||||||||| ||||| || ||| || ||||| | |  |||    | | ||    ||       ||| |   ||    | | |||    |||  || ||    ||  | |  |    |||  || ||    | ||   | |                    
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGATATGTCAGGATCTGGGAAAGGAGTGTGCAGTGCTTTGGCCATCTCTAATGCTATCACTAATCTCTGTGgtatgctttctttgtaacatatgttttgagaaagtggtacctttttctggattggcaaatttttaaaattttcctattatggtgtgaattttaatgtttttataataatgtttctaatttgaatttcatgcaacatgtag

upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G06930.1 (Glycine max), 5'ss of exon 3
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattc----taag-----gctttgtttttcagttaattagtcttttttttttggctttttaattgcaat-tcatttcatttccatt----------attccatgtcatctatag
|| |||||| | ||| |  ||||||| |||||||||||||| ||||| ||||| || || |  ||||||||||| || |||||||| || ||| | || ||| || ||||| | |  |||      | ||     |||   ||||   | |    |   ||||  | ||   |||  ||||  ||| |  ||  | |    ||          ||| ||||  |    |||
GAAAGGTTTGCAAAATTACTGCTTGGGGAAGACATGTCAGGATCTGGGAAAGGAGTGTGCAGCGCTTTGGCCATCTCTAATGCTATTACTAATTTGTGTGgtatgctttctttgtaacatatgtattgagaaagtgctaccttttctggattgacaaaattttcatgttacgtttcgaattttaatgttgttatactaatgttttaaatttgaatttcatgcaacacgtag

upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G55660.1 (Arabidopsis thaliana), 5'ss of exon 2
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattattccatgtcatctatag
|||||  |  ||||  |||||||||||||||||||||| || |||||  |||| |||||| | |||||||| ||||| ||||| || |||||||| |  |||  |||||         |||   | | |   |  || ||||   | || | |||  | |     |||| ||   | ||   | | ||    | ||| |||| ||  |   
GAGAGAATGGCGAAGTTGTTGCTTGGTGAAGACATGTCTGGTTCTGGTGAAGGAGTTTGTCCTGCTTTGGCTATTTCTAATGCCATTACCAATCTCTATGgta-gtttt---------atttcgaagttccatactttagtttgat-gtttctttgatatcttactttacttatgagtc---taacttttgat-ttcaatgtgatgaaag-

upper sequence: Vv13s0019g02710.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S58_274V6.1 (Physcomitrella patens), 5'ss of exon 3
GAGAGGTTTTCGAAACTGTTGCTTGGTGAAGACATGTCAGGGTCTGGAAAAGGGGTTTGTACAGCTTTGGCCATTTCAAATGCTATCACCAATCTTTGCGgtgtgttttctctctctcattctaaggctttgtttttcagttaattagtcttttttttttggctttttaattgcaattcatttcatttccattatt--cca---tgtcatctatag
||||||||| | ||||| |||||||||||||| ||||||||    || ||||||||||| ||||| ||||| || || ||||| ||||| ||| | |  ||||    |     || | |   |||     ||    |   ||  ||    ||||  | |||        | ||   |||   |  |    |||| |  |||   | |  |  | ||
GAGAGGTTTGCAAAACTATTGCTTGGTGAAGATATGTCAGGTGGGGGCAAAGGGGTTTGCACAGCGTTGGCTATATCGAATGCAATCACAAATTTGTCAGgtgaaaatcaaagctattaccgtaa-----tggcaatagattgtttg---ttttcatgttgaaagcaagaatgattttcgcgttgtaaatattaatgtccagatttttgttcacag