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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggcatttttagttttctcttgttctattttactcatgctgaaaactgaaattcttcttttggtctag

Basic information

species Vitis vinifera
transcript Vv13s0019g02410.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G160237_T02 (Zea mays), 5'ss of exon 3
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgt----tattggcattt----ttagttttctcttgttctattttactcat-----gctgaaaactgaaattcttcttttggtctag-------------
||| |||||||| ||||| ||||||| |||||||||  |||| || || ||||||||||||  ||| |||||| | || ||| | |||||||| || |||||      || ||||||        || | | ||| ||| |||   |||       ||| ||| ||||  | ||  | | |  |               
GGGCATGAATGATAGAGGGGTCTCATATACCTTTGGTGCTGACAAGGTTTCAGAATTCTTGCAAAAGCATGATCTTGATCTTATCTGTCGTGCTCACCAGgtaccgccttagcatttagtgcagcttctgttttgatctttttatttcacagttaactggaaattgaaggtgtttatattgcatgcgatgtgatgtcag

upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G07080.1 (Glycine max), 5'ss of exon 2
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggcattttt---agttttctcttg--ttctattttactcatgctgaaaactgaaattcttcttttggtctag--------------------
||| |||||||||||||| || || |  |||||||| |||||||  ||  | |||||||||||||| ||||| || ||||||||||||||||| || ||||| | ||   |||||   | |  ||  |    ||||||  ||   | | | |    |   || |||   | |     |                    
GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATATGGTCGCTGAATTCTTGACAAAGCATGACTTGGACCTTGTTTGTCGTGCTCACCAGgtcactgtttttttttacaatactcattcagtttctataataaaaaggttaagcg-tacgatgctttactggacactgacattataaattttatgtag

upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G41890.2 (Glycine max), 5'ss of exon 2
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgtta---ttggcatttttagttttctc-ttgttctattttactca--tgctgaaaactgaaattcttcttttggtctag--------------------
||| |||||||||||||| || || |  |||||||| |||||||| ||  | || ||||||||||| ||||| || |||||  |||||||||| |||||||| |   ||||  ||||||   | ||| ||   ||  | || | |   | | |||  |   || |||   | |     |                    
GGGTATGAATGACAGAGGAGTGTCCTACACCTTTGGCCCTGATAAGGTCGCTGAGTTCTTGACAAAGCATGACTTGGACCTCATTTGTCGTGCTCATCAGgtcactcttggtttttttacaatactcattcagcttctctagtaaaaaggttaaacttatgatgctttactggacactgacattataacttttatgtag

upper sequence: Vv13s0019g02410.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G39840.1 (Arabidopsis thaliana), 5'ss of exon 2
GGGGATGAATGACAGAGGTGTCTCATTTACCTTTGGGCCTGATAAAGTGTCAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggcattt--ttagttttctcttgttctat---tttactcatgctgaaaactgaaattcttcttttggtctag
||| |||||||| |||||||| ||||  |||||||| || |||||||| || || ||  | || |||||||||||||| ||||| |||||||||||||||||   |    ||   | |  | ||| |  | |||    |||  | ||| | | ||  ||  |   | ||||     ||
GGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTTTCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGgtagatatttttcaatcatgtctctttgatactactgcttttgtgatgttaacaagggagttggattttttatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351026429|gb|FQ428441.1|FQ428441
EST:     CAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAG                         GTTGTGGAGGATGGATATGAATTCTT
genomic: CAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggca ... tttggtctagGTTGTGGAGGATGGATATGAATTCTT
EST: gi|161712905|gb|FC062378.1|FC062378
EST:     CAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAG                         GTTGTGGAGGATGGATATGAATTCTTTGCCGATAGGCAACTTGTTACCGTA
genomic: CAGAATTCTTGACAAAACATGATTTAGACCTTGTTTGTCGTGCCCATCAGgttattggca ... tttggtctagGTTGTGGAGGATGGATATGAATTCTTTGCCGATAGGCAACTTGTTACCGTA