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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatttgtttggttcttgtttttttctttcttcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag

Basic information

species Vitis vinifera
transcript Vv13s0019g02280.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G41810.1 (Glycine max), 5'ss of exon 2
AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatttgtttggttcttgtttttttctttcttcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag
| || || ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||| || |  ||||||| ||  ||    |    | |||| | | | ||| ||| || | |      | |  ||| |  ||   || ||                                     
AATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGgtaatgcataactatgtataaaatagaatgacctgttgtctctcttttt-ttctttgtcaacaaactaacttttctggtttgtttgtaaag----------------------------------

upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G07160.1 (Glycine max), 5'ss of exon 2
AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatt---tgtttggttcttgtttttttctttcttcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag
| || || ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||| || |  ||||||| ||  ||    ||      | || | | | | ||| |  |||||| | |||   | |     ||   | |  | | |||| || |                          
AATCGGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGgtaatgcataactatgtatagaatagaatgacccagttttctctctctttttatctctttttttctttgcca-acaaactaacttttcttgtttatttataaag------------------------

upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 2
AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatttgtttggttcttgtttttttctttcttcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag
|| ||||||||||||| || ||||||||||| |||||| |||| ||||||||||| |||||||| || ||||||||| || |  | |   |   |  || |  |||| ||   |||| |||   ||| |||| |      | | ||||| || | | || | |  |                                 
AGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACATGGGgtaatgca-tattgcataaccatttagagtggtactg--ttttctctcgtttctttttcactcaactaacattttataatttatt-tgtaaag--------------------------------

upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA11G34470.1 (Glycine max), 5'ss of exon 2
AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatttgtttggttcttgtttttttctttcttcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag
|| ||||||||||||| || ||||||||||| |||||| |||| ||||||||||| |||||||| || ||||||||| || |  | |   |   |  || |   ||| ||  ||| | |||   ||| |||| |      | | ||||| || | | || | |  |                                 
AGCCTGGAAAGCTCATAACATGGGGTTCAACAGATGATTTAGGCCAAAGCTATGTTACATCTGGCAAACATGGGgtaatgca-tattgcataaccatttagaggggtactgctttctctctcatttctttttcactcaactaacattttataatttatt-tgtaaag--------------------------------

upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G55580.1 (Arabidopsis thaliana), 5'ss of exon 2
AGTCTGGAAAGCTCATCACCTGGGGTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagcactatgtgtactatttgtttggttcttgtttttttctttct-tcctttttatgttttttatattttttattctcttctatgtattaatcagcattttcctctgttgtatttttaag
|||| || ||||| || || |||||||| || |||||||||||||||||||| || |||||||| || || |||||    |||   |   |    ||  |||    || |  |||| || | | | |    |||  |||||   || |||  ||| | ||   | |||                                
AGTCAGGGAAGCTAATTACATGGGGTTCTACAGATGATCTAGGTCAAAGCTACGTCACATCTGGGAAACACGGGgt----tagattttcttaacttaagtgtgaaattttgattttcttttctttgtgaaatttgagttttagttagtttcgattttattg-gtttatag------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385026|gb|EC949508.1|EC949508
EST:     GTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGG                         GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCT
genomic: GTTCAACGGATGATCTAGGTCAAAGCTATGTGACATCTGGAAAGCATGGGgtagtgtagc ... tatttttaagGAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCT