Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAATTCAGTAACGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtgcggacctttgtgttaaagattctgtcttttgcagtggttgttactttcctggttatttgctatgacatgcaagagaattatttaattatg...

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700937|gb|EE078028.1|EE078028
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|71860037|gb|DT009092.1|DT009092
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110703601|gb|EE080591.1|EE080591
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|71863746|gb|DT012801.1|DT012801
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|71859225|gb|DT008280.1|DT008280
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110357315|gb|EC920771.1|EC920771
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110723901|gb|EE099257.1|EE099257
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110721290|gb|EE098120.1|EE098120
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110727671|gb|EE104694.1|EE104694
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110692310|gb|EE071412.1|EE071412
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|110356627|gb|EC919593.1|EC919593
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|30299440|gb|CB976234.1|CB976234
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
EST: gi|71860871|gb|DT009926.1|DT009926
EST:     CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAG                         TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC
genomic: CGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtg ... tggatgacagTCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGAGTTCAATGGCGAAGGAAGTTTCCAATGGGGATCACAATTCAGTAACGAAGCCGCCACCGACGCCGTCTCCTCTGCGAAATTCTAAGTTTTTCCAGgtgaattgtgcggacctttgtgttaaagattctgtcttttgcagtggttgttactttcctggttatttgctatgacatgcaagagaattatttaattatg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagagaa