Sequence
atgc intronic sequence ATGC exonic sequenceGGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G080512_T01 (Zea mays), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggac-atcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GAAAAGACATGATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTAAGCTACAACGAGAAGACTGGgttcgtttctctttc------acatgtgg------aattc--ttttaatttatctaccagggagatagaatatat----tgtaataa--ttgcatagtacgatgcatgcag--------------------------------------------------
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G407382_T01 (Zea mays), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GAAAAGACATAATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTCAGCTACAACGAGAAGAATGGgttcgtttctctttc------acatgtgg------aattc--ttttaatttatctaccagggagatataatatat-tgtaataattgcatagtacgaagcatgcag------------------------------------------------------
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G407382_T02 (Zea mays), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GAAAAGACATAATTGGCCGTGCTCGAACAGGGACTGGGAAGACCCTGGCTTTTGGTATTCCTATCATGGACAAGATCCTCAGCTACAACGAGAAGAATGGgttcgtttctctttc------acatgtgg------aattc--ttttaatttatctaccagggagatataatatat-tgtaataattgcatagtacgaagcat----gcagatttggcag-----------------------------------------
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G45030.1 (Glycine max), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaac---acttgatccattggt--tcaatttttaccttttctt---tttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag------------------------
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GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGGTCATTCAGTTTAATGCTAAGCATGGgttagttctatttttcttttttcttgttttgatatcgtgatgcttatttttcgctattacttgaatttgtaacttgtttctctgcgtgagttgaaggtggactaggtaattgatgttggtgtggatgga-atcatggaaaaaattgatttgtttttttaactgtacaagtttttttgtggttgatgtggcag
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G03760.1 (Glycine max), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtt----tgtttactccagtaaca-cttgat------------ccattggttcaatttttacctt--ttctttttgaagattgattatgtgttctgttataa--aatggaacag--gacatcaatgcaatttttggtct--ttattattggcataatattttttatgttttgtacaaacag
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GTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCATGGATAAGATCATTCAGTTTAATGCTAAGCATGGgttagttctattcttttttttaatgatatcgtgatgcttatgtttcgctatcacttgaatttgtaacttgtttctctgcgtgagttaaaggtggactaggcaattgctattggtgtggatgaaatcatggaaaatattgatttgttttttaactgtgcaagtttttttgtggttgatgtgg-cag
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA18G14670.1 (Glycine max), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgt-ttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GACGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGgtactttatattagttacacttacatcttacttgaatctgtagtctta--tttttctgcttgaaggaggattaggtaaccggt-------------agtatatagtcttgatttgtgtctttaacta--aacaatttttttttattgattgttgcag----
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G41510.1 (Glycine max), 5'ss of exon 3
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGgtac-tttatat---ttggttacacttacatc-ttacttgaatctgtagccttgtttttct--gcttgaagtaggattttctggtagtata-----------tagtcttgatttgtgtcttta--actaaacaaatttttgtggttgattattcag----
upper sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
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GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgtttgt--gtttactg-agtcatttgaggttcagagaattatgttttctggttggtttactgatttttggggttttatgtggtttttgatgtgatag---------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33410545|gb|CF216172.1|CF216172EST: TTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGG ACGTGGGAGGAATCCATTAGCCTTGGTTTTGGCTCCAACAAGAGAACTTGC
genomic: TTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgt ... gtacaaacagACGTGGGAGGAATCCGTTGGCCTTGGTTTTGGCTCCAACAAGAGAACTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA