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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGCTTGCCCATGTGCACTTGGCTTGGCCACACCTACGGCTATTCTGgtaattgtacactcatgggaaatatttgatatggttcatgtgtttcatgtttatattttgtcacagattttaatcaaatctagaaacattccag

Basic information

species Vitis vinifera
transcript Vv12s0142g00330.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G24520.1 (Glycine max), 5'ss of exon 6
GTTGTTGCTTGCCCATGTGCACTTGGCTTGGCCACACCTACGGCTATTCTGgtaattgtacactcatgggaa--atatttgatatggttcatgtgtt-tcatgtttatattttgtcacagattttaatcaaatctagaaacattccag
||||||||||| |||||||||||||| || ||||||||||| ||  | |||||||    |   ||||||  |  | ||||  |||   | |  | |  | ||||||  | |    || |   |  | |    | |  |||        
GTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGgtaac---attttcatggagaccacatttattatctcttagttatcattatgtttgaactaatccatattgtacacttttgtgtttaaaag------

upper sequence: Vv12s0142g00330.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G07710.1 (Glycine max), 5'ss of exon 10
GTTGTTGCTTGCCCATGTGCACTTGGCTTGGCCACACCTACGGCTATTCTGgtaattgtacactcatgggaa--atatttgatatggttcatgtgtt-tcatgtttatattttgtcacagattttaatcaaatctagaaacattccag
||||||||||| |||||||||||||| || ||||||||||| ||  | |||||||    |   ||||||  |  | ||||  |||   | |  | |  | ||||||  | |  | ||     |  | |    | |  |||        
GTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGgtaac---attttcatggagaccacatttattatcacttagttatcattatgtttgaactaagccatgttgtacacttttgtgtttaaaag------