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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCCTAACAATGTTTTGCAAAGTTGGAATGCTACCCTTGTCAATCCTTGCAAATGGTTTCATGTTACACGCAACAGTCACAATAGTGTTACAAGAGTgtaagatgcttacttttgttagattttttcacccaaacgcaacaagttatattgtttcttgccatttggagtcaatgttgtctttatatgttatttttcggctgttatattgacatttttccaactgtatactcacag

Basic information

species Vitis vinifera
transcript Vv12s0121g00300.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351045316|gb|FQ451764.1|FQ451764
EST:     TGCACATGGGATCATGTTACATGCAACAGTGACAAAAGTGTTATAACAGT                         TGATCTTGGAAATGCAAATTTATCCGGTCAACTGGTTCCACAGCTTGGTCA
genomic: TGCAAATGGTTTCATGTTACACGCAACAGTCACAATAGTGTTACAAGAGTgtaagatgct ... atactcacagTGATCTTGTAAATGCAAATTTATCCGGTCAACTGGTTCCACAGCTTGGTCA
EST: gi|349817988|gb|FQ407977.1|FQ407977
EST:     TGCACATGGGATCATGTTACATGCAACAGTGACAAAAGTGTTATAACAGT                         TGATCTTGGAAATGCAAATTTATCCGGTCAACTGGTTCCACAGCTTGGTCA
genomic: TGCAAATGGTTTCATGTTACACGCAACAGTCACAATAGTGTTACAAGAGTgtaagatgct ... atactcacagTGATCTTGTAAATGCAAATTTATCCGGTCAACTGGTTCCACAGCTTGGTCA