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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCCCCTGAACCTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaagttgacaaagatgtttcttatttatttatttatatttaaaaaaatgaaaagcgaaagaaaaaaaaatgttaagttatgtattacattttgttatctgtacattccgtgcaagcatgcatttcaagtttttagttcttttgctttcaattgtag

Basic information

species Vitis vinifera
transcript Vv12s0059g01930.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418607|gb|EC984768.1|EC984768
EST:     GCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: GCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|77584192|gb|DV221151.1|DV221151
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|27584710|gb|CB007405.1|CB007405
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|349811810|gb|FQ410607.1|FQ410607
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGCTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|27586086|gb|CB008781.1|CB008781
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110385536|gb|EC950069.1|EC950069
EST:     TGAT-GTGCAAAG                         GACACAAAGGCAAA-GAGAGGGGAACTTCAGGCCAAAGAGGCTGAACTGAA
genomic: TGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGA-GGGAACTTCAGGCCAAAGAGGCTGAACTGAA
EST: gi|71884369|gb|DT033424.1|DT033424
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|27584919|gb|CB007614.1|CB007614
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110376126|gb|EC941168.1|EC941168
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110357026|gb|EC920280.1|EC920280
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|71870414|gb|DT019469.1|DT019469
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110699817|gb|EE077160.1|EE077160
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|71870410|gb|DT019465.1|DT019465
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|161710538|gb|FC060684.1|FC060684
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110722937|gb|EE099679.1|EE099679
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
EST: gi|110722049|gb|EE097937.1|EE097937
EST:     CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAG                         GACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA
genomic: CTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaa ... tcaattgtagGACACAAAGGCAAAGGAGAGGGAACTTCAGGCCAAAGAGGCTGAACTGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAGTGTCCCCCCTGCAGCCAACTCTAGGCTTTCACCACTCCCCCCTGAACCTGCTGGTTATCGTGGTGCAACAGTTGATATTCCTCTTGATGGTGCAAAGgtagatcaaagttgacaaagatgtttcttatttatttatttatatttaaaaaaatgaaaagcgaaagaaaaaaaaatgttaagttatgtattacattttgttatctgtacattccgtgcaagcatgcatttcaagtttttagttcttttgctttcaattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG