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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATTATACTAAGCTTGAGAATGTTGGGGCTGAGGATTACTTCTGTAGGTTCGAGTACAAGGCTGCAACAGGAGGGTTCACTCCCGACCGGGTTGCTGTgtgagtccgagttccattaaagattaaactgcatttagctcatagaagcagaaaattactttcaaattgttaaactaataattacttggattggatgttttgagggtttttgattggcactgactgatgcttgaatgtttttgggttttgatttaaag

Basic information

species Vitis vinifera
transcript Vv12s0059g01180.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g01180.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S171_11V6.1 (Physcomitrella patens), 5'ss of exon 2
AGAATTATACTAAGCTTGAGAATGTTGGGGCTGAGGATTACTTCTGTAGGTTCGAGTACAAGGCTGCAACAGGAGGGTTCACTCCCGACCGGGTTGCTGTgtgagt--ccgag--------ttccattaaagattaaact---gcatttagctcatagaagcagaaaattactttcaaattgttaaactaataattacttggattggatgttttgagggtttttgattgg--cactgactgatgcttgaatgtttttgg--gttttgatttaaag-------
|||| || || || || |||  |||  | |||||||| ||||||||| |||| |||||||||||  | || || || |||||||| ||||| || ||||||| |||  ||| |        ||  | |     | || ||   ||| ||  ||  | |            | |  |  |         |   | || |            || |  |  ||| || |||   || | |||  | | || ||||| ||     |||||| |  |         
AGAACTACACGAAACTGGAGGCTGTGAGTGCTGAGGACTACTTCTGTCGGTTTGAGTACAAGGCAACTACTGGTGGTTTCACTCCTGACCGCGTCGCTGTgtaagttaccgtgatagatttttttactgggcgtaaatcttgtgcagtttacttgtggtcatgtgctgcgaatgccttacatccggcattgcattttcccaaggacttaattctaggattttatgtttgattcagtaactatttcgtggatgttattaattattttgagtatactactttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351025186|gb|FQ433603.1|FQ433603
EST:     TTCGAGTACAAGGCTGCAACAGGAGGGTTCACTCCCGACCGGGTTGCTGT                         GTATTGTAAGTGCGAGATGCCTTATAATCCGGACGACCTTATGGTGCA
genomic: TTCGAGTACAAGGCTGCAACAGGAGGGTTCACTCCCGACCGGGTTGCTGTgtgagtccga ... tgatttaaagGTATTGTAAGTGCGAGATGCCTTATAATCCGGACGACCTTATGGTGCA