1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GATGTGGGCTGTCCCTGAATCTAAAGGCATCACAAGGACAACTGCCGTAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctctctcacatttcattaagttgatttcatttattgtaattctttattttataatcgttgtctgattccatctgactgggtgcctttag
species | Vitis vinifera |
transcript | Vv12s0059g00640.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAAGACATTATTGGGGAAGTTEST: gi|37183584|gb|CF602938.1|CF602938
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTEST: gi|110367432|gb|EC931364.1|EC931364
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTEST: gi|110723286|gb|EE100428.1|EE100428
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCTGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTEST: gi|110693148|gb|EE069126.1|EE069126
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTTACTCTAAGGACATTATTGGGGAAGTTEST: gi|37183645|gb|CF602999.1|CF602999
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAAGTEST: gi|110698839|gb|EE076793.1|EE076793
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAA-GT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTEST: gi|110720685|gb|EE096823.1|EE096823
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
EST: TAGAAGCTGAAAAGTTGAAGCTAGTTTCTGAGGGTTGTGATCCAAAAACT TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
genomic: TAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctct ... gtgcctttagTTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTGGGCTGTCCCTGAATCTAAAGGCATCACAAGGACAACTGCCGTAGAAGCTGAAAAGTTGAAGCTAGTTTCCGAGGGTTGTGATCCAAAAACTgtgagtctctctcacatttcattaagttgatttcatttattgtaattctttattttataatcgttgtctgattccatctgactgggtgcctttag
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC