Sequence
atgc intronic sequence ATGC exonic sequenceACCTCCACAGCTGCTTATGTCGGCCGCTTACTCTCTCAATCTCTGGGACTTGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAGgtcctctttcatctcctctccacatgggttttgcacattttcttcaattttggttttcttttaatgggttttacttcttttttaacattggttttcgatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G00860.1 (Glycine max), 5'ss of exon 1
------ACCTCCACAGCTGCTTATGTCGGCCGCTTACTCTCTCAATCTCTGGGACTTGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAGgtcctctttcatctcctctccacatgggttttgcacatt--ttcttcaattttggttttcttttaatgggttttacttcttttttaacattggttttcgatt
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AAAGAGACCACCCCAGTTGCTTATGTCTGCTGCTTACTCCCTCAATTTCTGGGATTTCCAGCATTTCATGGTCATCATCAAACCCTCTTCACCT--TCTCAGgtaaatttctatggatcctctcttatatttatttgtacttactagtacttgtaattgaattaccccttca---attcatggataagttcaatatagttcttgg---
upper sequence: Vv12s0059g00600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G47760.2 (Glycine max), 5'ss of exon 1
------ACCTCCACAGCTGCTTATGTCGGCCGCTTACTCTCTCAATCTCTGGGACTTGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAGgtcctctttcat-ctcctctccacatgggt-tttgcacattttcttcaatt-ttggttttcttttaatgggttttacttcttttttaacattggttttcgatt
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AAAGGGACCACCCCAGTTGCTTATGTCTGCTGCTTACTCCCTCAATTTATGGGATTTCCAGCATTTCATGGTCATCATCAAACCCTCTTC------TCTTTCTCAGgtaaatttctatgcgccctctcttatatttatttatacttactatttagtaattgaattacccct--tcaattcatggataagctcaacat-agttcttggtgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77579845|gb|DV218798.1|DV218798EST: TGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAG GCCTTTGTTTATGATTTTCAACCTAAAGATCCTGAAAATATGTATGTAGCA
genomic: TGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAGgtcctctttc ... ttttgtgtagGCCTTTGTTTATGATTTTCAACCTAAAGATCCTGAAAATGTGTATGTAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACCTCCACAGCTGCTTATGTCGGCCGCTTACTCTCTCAATCTCTGGGACTTGCAGCACTTCATGGTCATCATCAAACCCTCTTCACCCACTCTTTCTCAGgtcctctttcatctcctctccacatgggttttgcacattttcttcaattttggttttcttttaatgggttttacttcttttttaacattggttttcgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctct