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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgctgagacagaatttatcaattttcagtttcgtttctccctttcagtattctgaagctccatgttgtaagggctattgagttcccattgcatc...

Basic information

species Vitis vinifera
transcript Vv12s0059g00270.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052318|gb|FQ455490.1|FQ455490
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|349825727|gb|FQ421826.1|FQ421826
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|110708322|gb|EE085731.1|EE085731
EST:     TATCAGACCATCTTAAGGCCGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351036975|gb|FQ459497.1|FQ459497
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351024357|gb|FQ423780.1|FQ423780
EST:     TATCAGACCGTCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351019797|gb|FQ439614.1|FQ439614
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|352790469|gb|FQ478109.1|FQ478109
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351035860|gb|FQ463705.1|FQ463705
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351046018|gb|FQ441401.1|FQ441401
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|349826737|gb|FQ418828.1|FQ418828
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351040767|gb|FQ438311.1|FQ438311
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351046996|gb|FQ454606.1|FQ454606
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|352790521|gb|FQ478161.1|FQ478161
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAGCAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351029565|gb|FQ427405.1|FQ427405
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|352798550|gb|FQ480575.1|FQ480575
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351045658|gb|FQ440843.1|FQ440843
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|349809574|gb|FQ414464.1|FQ414464
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGGGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351048713|gb|FQ449383.1|FQ449383
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351052941|gb|FQ453928.1|FQ453928
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351015379|gb|FQ447208.1|FQ447208
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351053123|gb|FQ455580.1|FQ455580
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351051565|gb|FQ450117.1|FQ450117
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|352786826|gb|FQ481201.1|FQ481201
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351032378|gb|FQ461631.1|FQ461631
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|349821422|gb|FQ411043.1|FQ411043
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACGAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351028317|gb|FQ427213.1|FQ427213
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|349828483|gb|FQ417225.1|FQ417225
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|161718885|gb|FC066368.1|FC066368
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|110711494|gb|EE088039.1|EE088039
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351055571|gb|FQ452036.1|FQ452036
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351037337|gb|FQ460536.1|FQ460536
EST:     TATCAGACCACCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351038373|gb|FQ461065.1|FQ461065
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|110726737|gb|EE102779.1|EE102779
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351038771|gb|FQ464637.1|FQ464637
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351038585|gb|FQ464451.1|FQ464451
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|351047090|gb|FQ454700.1|FQ454700
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
EST: gi|352790520|gb|FQ478160.1|FQ478160
EST:     TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAGCAAG                         GAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT
genomic: TATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgct ... ttcattgcagGAACTCAAAAGAAGGAAACTACCTGTTGGAGTTATTAGAGCCCAAACAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAAGTCCAATGCTTCTCTAAAGGAGACGGGTTTCTTTGAAGTTTCAGTATCAGACCATCTTAAGGCTGAATTAAGCCTTGGTTTGTCAAAGAACAAGgtgacatgctgagacagaatttatcaattttcagtttcgtttctccctttcagtattctgaagctccatgttgtaagggctattgagttcccattgcatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc