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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca...

Basic information

species Vitis vinifera
transcript Vv12s0057g01480.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g12660.2 (Oryza sativa), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattg-tttctgtttgatttcaaaaattcca----
 ||  |||| ||||  |  ||||| ||||| |||||||| || ||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||      |    ||  | |    |||    ||| |  |||| | | | | ||| | |   || ||||   | | |   || |   |||   |   | ||    
CTCGAGGGCCTATGGAAACAACATTGGTGGTTACAAGAACGAGGGGTTTGTTGAAGTTCTTGCTGCGCAGCAGAGCCCAGAGAATCCTAACTGGTTTCAGgtatcttggttaatctgtattaacttgcc---aaatt--ttttatagtagtactgtattagtttgaattgactcggtaagtggtaatttttgtactatgcaggta

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os08g25734.2 (Oryza sativa), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaaga-acatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctatt--gtttctgtttgatttcaaaaattcca
 ||  | || ||||  |  ||||| || |||||||||||||||||||| |||||||| || ||||| |||||||| || || || || |||||||||||||||  | ||    |     |||| | || |||    |  || |      |    ||     |    | |||| ||    | |       | || | |||    
GTCAAGAGCCTATGGGAACAACATTGGCGGGTACAAGAATGAAGGGTTCGTTGAAGTCCTCGCTGCACAGCAGAGCCCAGATAATCCTAACTGGTTTCAGgtatcatactcaatatcaaagtgttttgtttgatgtcaaatgtacatctacctttgggcattgcatatttcttttccactccaaagcattctctataata---

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G068506_T03 (Zea mays), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca-----
 ||  | || || |  || ||||| || |||||||||||||||||||||||||||||  | ||||| |||||||| || || || || |||||||||||||||       | | || | || ||||  ||   |  || |    || ||   |||| || |||  ||        || |        |||| |  || |      
CTCAAGAGCCTACGGGAGCAACATTGGAGGGTACAAGAATGAAGGGTTTGTTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAGgtat-----ccctactactgttgtgtctttctgatttcctcaaatgcaaaatctgccatttctataacatgcacattccacaccatattcacatttttctcattg

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G106213_T02 (Zea mays), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaa-actcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca
 ||  |||| ||||  |  ||||| |  |||||||||||||| || || ||||| || ||||| || || |||||||| ||||| ||||||||||||||||||      |    ||   |   |||| |      | ||||  |     |||  | ||  ||  | ||    | || |  ||||||||  |||  |   | 
CTCGAGGGCCTATGGAAACAACATTGCCGGGTACAAGAATGAGGGATTCGTTGAGGTCCTTGCAGCACAACAGAGTCCAGAGAATCCCAACTGGTTTCAGgtatctttgtttatctgttgacatgtgatcaatttattcatcctggattattagttcatgctgat-aacaggagtgataatgtttgataccaagcacatct

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G163437_T01 (Zea mays), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttt-tggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca----
 ||  | || || |  |  ||||| || |||||||||||||| ||||| ||||||||  | ||||| |||||||| || || || || |||||||||||||||       | | ||   |  ||||  ||    | |   |    ||  |   |||| || || | ||        | |         || | |  |||      
CTCAAGAGCCTACGGGAACAACATTGGAGGGTACAAGAATGACGGGTTCGTTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAGgtat-----ccctactaatgctgtgtcttttctgattttctcaaatgtgaaatctgccatttcgttaacatgcacatctgacaccatatttacattttctccatt

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA14G01290.1 (Glycine max), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcg-tgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattc-tattgtttctgtttgatttcaaaaattcca-
||| || |||||||| || ||||||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||   || |  ||| |      |    || |  ||       |   || |  ||   || ||| | ||  | || |  |    |   |   |  ||| || 
TTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgccagcactgccttgactctaaattttggtaccttgcgatgataactgttgttgtcccttgatttgatgttttaacaaacttggtgtgatcattgcag

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G47460.1 (Glycine max), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaa-gaacatcgtgcttcagtgg----tgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgttt--ctgtttgatttcaaaaattcca-
||| || |||||||| || ||||||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||| || ||   ||| |   | |    |    || || ||       |    | |  |    || |||  ||| |||| |||  |    |   |   |  ||| || 
TTCTCGTGCTTATGCAAGCAACATGGGTGGCTACAAAAATGAGGGATTTGTTGAGGTTCTTGCTGCTCAGCAGAGTCCTGAGAATCCTAATTGGTTCCAGgtaatgaccacattgccttgtttgactctaaattttgatacctcgcgatgatgacttttcttgtccctt-gattttattttttaacaaacttggtgtgatcattgcag

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S76_105V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtg-gtgtgct-tggaaactcattttttggaatt----cctgcaatctcttcaattc-tattgtttctgtttgatt-----tcaaaa---attcca------------------------------------------------------------
 ||||| ||||| || || || ||||| || |||||||| ||||| || || |||||| | ||||| || || ||||||||||| ||||| |||||||||||  | | ||  |   | || | ||| | | | ||    || |    | ||||      |||  |  ||  || |   |||  |   |  | ||       || ||    |||                                                              
GTCCCGAGCTTACGCAAGCAATATGGGGGGATACAAGAACGAAGGATTCGTGGAAGTTTTAGCTGCCCAACAAAGTCCTGAGAATCCCAATTGGTTTCAGgt--gcagattatttcttagcgtgtgagttgttgatttacactcaaagaaattggtgtttgcggtgcctggaacttgcattcgtaacgcgtaataactggccagaacacgttctgtaattgaaattcagtgatgatgtgattatgctcacaatgttgtaaactgttgtgattcag

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S2_392V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgctt------cagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca
 ||||| ||||| || ||||||||||| ||||||||||||||||| || || || ||| | ||||| ||||||||||| ||||| || || |||||||||||| ||     |    |      || | ||| | ||   ||     | |       ||    |||||   || |  ||     | |  |     | | |       
GTCCCGAGCTTACGCTAGTAACATGGGAGGGTACAAGAATGAAGGTTTCGTGGAGGTTTTGGCTGCCCAGCAGAGTCCCGAGAATCCTAATTGGTTTCAGgtatgatacctgcatataattcacaatcgtgggtttttgaatgggctgtgcaattctctgagaatcttcccagtcttacctgatgtcctcacgctgagat------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S239_45V6.1 (Physcomitrella patens), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaa-gaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattc-ca---
 ||||| || || || ||||||||||| ||||||||||| || || || || |||||  | |||||||| ||||| || || ||||||||||||||||||||   | || |  | | ||      || | |||  | |   | | || | ||| |   | | |  ||  | ||        |||  | |||  |  | | ||   
GTCCCGAGCATACGCTAGTAACATGGGAGGGTACAAGAACGAGGGCTTCGTGGAAGTCTTGGCTGCTCAACAGAGCCCCGAAAACCCCAACTGGTTTCAGgtgttgtacctgattcctcttcaaagttcgtgg--attttctctatgtagttcatttta-cgcgccagatttac--accacgttctacttctgatctgcgcacga

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ17026 (Selaginella moellendorffii), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca
 || || |||||| |||||||||||||    |||||||| ||||| || || || ||||| |||||||| || ||||| ||||| || ||||||||||||||||     | || ||  |     ||  ||     |||    ||        ||| |||   ||   || ||                            
ATCGCGAGCTTATTCCAGTAACATGGGAAACTACAAGAACGAAGGATTCGTGGAGGTTCTCGCTGCTCAACAAAGTCCCGAGAATCCTAACTGGTTTCAGgtaa-----ttgttctcaaa----gtttttaagttctcgcagttccag----ctgaaattgtttt--ttgtag---------------------------

upper sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: EFJ16157 (Selaginella moellendorffii), 5'ss of exon 2
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca
 || || |||||| |||||||||||||    |||||||| ||||| || || || ||||| |||||||| || ||||| ||||| || ||||||||||||||||     ||         |   || || | |    ||  |   |   ||  || |                                           
ATCGCGAGCTTATTCCAGTAACATGGGAAACTACAAGAACGAAGGATTCGTGGAGGTTCTCGCTGCTCAACAAAGTCCCGAGAATCCTAACTGGTTTCAGgtaattgt-tctcaaagtttttaagttctcgcagttccagctgaagctgtttttgtag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110720682|gb|EE096820.1|EE096820
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|110689182|gb|EE065182.1|EE065182
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|27584163|gb|CB006858.1|CB006858
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|30325486|gb|CD008748.1|CD008748
EST:     GAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: GAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|28967738|gb|CB346771.1|CB346771
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATG
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATG
EST: gi|71859193|gb|DT008248.1|DT008248
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|352769779|gb|FQ468707.1|FQ468707
EST:     TTGAAGTTCTTGCTGCTCACCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTAATGGCTGTTTG
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTG
EST: gi|352776771|gb|FQ472658.1|FQ472658
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|110718448|gb|EE095289.1|EE095289
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAAGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|30324817|gb|CD008079.1|CD008079
EST:     GAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: GAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|71860740|gb|DT009795.1|DT009795
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGC
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGC
EST: gi|110685530|gb|EE062331.1|EE062331
EST:     TGAAGTTCTTGCTGCTCAACAAAGTCCTGAAAACCC-AACTGGTTTTCAG                         GAAA-ATCTGATGCTGTCAAGGAA-TATTTATGGCTGTT
genomic: TGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTT-CAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCA-GGCAGTATTTATGGCTGTT
EST: gi|352777902|gb|FQ466955.1|FQ466955
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|33406108|gb|CF211735.1|CF211735
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTAT
EST: gi|30324290|gb|CD007552.1|CD007552
EST:     GAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: GAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|110703129|gb|EE079706.1|EE079706
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
EST: gi|27579307|gb|CB002002.1|CB002002
EST:     TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAG                         GGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT
genomic: TTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacat ... ggatttacagGGAACAGCTGATGCTGTCAGGCAGTATTTATGGCTGTTTGAGGAACACAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCCCGGGCTTATGCCAGTAACATGGGTGGGTACAAGAATGAAGGGTTTGTTGAAGTTCTTGCTGCTCAGCAGAGTCCTGAGAACCCCAACTGGTTTCAGgtaagaacatcgtgcttcagtggtgtgcttggaaactcattttttggaattcctgcaatctcttcaattctattgtttctgtttgatttcaaaaattcca

- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatt