Sequence
atgc intronic sequence ATGC exonic sequenceCTGAGGGTTATCTTACTGAGAGCCAGAGACATGGAAAGGCTGGGTACAGCCTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgcatggattctttcagtatcttcattcatcataaattttcattttgagtatatttaatcatggagtttttgtttttgttttaatttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G52980.1 (Arabidopsis thaliana), 5'ss of exon 2
CTGAGGGTTATCTTACTGAGAGCCAGAGACATGGAAAGGCTGGGTACAGCCTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgcatggattctttcagtatcttcattcatcataaattttcattttgagtata-tttaatcatggagtt-tttgtttttgttttaatttgcag
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CTGAAGGATATCTCACAGAGTCACAAAGACATGGCAAAGCTGGTTTTAGCCTCACCAAGCTTCTTGCTCGCTTAAAGAACACCATCCGCCTCATCGACAGgtta-gttacttagtcacgtaacacatattaacaaat---gaatatacgagg-aagtgtagtttatgcattgttttgcttaatggtgtttgaatt-gtag
upper sequence: Vv12s0057g00570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G05160.1 (Arabidopsis thaliana), 5'ss of exon 3
CTGAGGGTTATCTTACTGAGAGCCAGAGACATGGAAAGGCTGGGTACAGCCTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgcatggattctttcagtatcttcattcatcataaattttcattttgagtat-atttaatcatggagtttttgtttttgttttaatttgcag
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CTGAAGGATATCTCACTGAGTCACAAAGACATGGCAAAGCTGGCTATAGTCTCACCAAGCTTCTTGCTCGCTTGAAGAACACGATTCGCCTCGTCGACAGgtt-tgtta-attagttataatagtactctttct--------atttcaatctaaagtattgttttcttatagtgtttgaatttgtag------------
upper sequence: Vv12s0057g00570.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S31_251V6.1 (Physcomitrella patens), 5'ss of exon 1
CTGAGGGTTATCTTACTGAGAGCCAGAGACATGGAAAGGCTGGGTACAGCCTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgcatggattctttcagtatctt-cattcat--cataaattttcattttgagtatattta-atcatggagtttttgtttt-tgttttaatttgcag
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CAGAGGGTTATCTCACTGAAAGCCAGCGGCATGGAAAAGCTGGTTACAGCCTTACAAAGCTGTTGGCTCGCTTGAAGAATACTGTGACTCTCATTGATAGgtacgtgcctttgtcgtgttacaacttttggtatgcatggcgtatgccctttctttgactctattcccattctgcagtacaaacactgcaagtcaacatt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717052|gb|FC068460.1|FC068460EST: CTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAG ACCTCATGGGCAGCATTCTGTGATCCTGGCGGAAGACCTCCCCAAGTACAT
genomic: CTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgc ... taatttgcagACCTCATGGGCAGCATTCTGTGATCCTGGCGGAAGACCTCCCCAAGTACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAGGGTTATCTTACTGAGAGCCAGAGACATGGAAAGGCTGGGTACAGCCTGACGAAGCTTCTTGCTCGATTGAAGAACAGCATTCGCCTCATTGACAGgtcctgctgcatggattctttcagtatcttcattcatcataaattttcattttgagtatatttaatcatggagtttttgtttttgttttaatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC