Sequence
atgc intronic sequence ATGC exonic sequenceAAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaatttgttcacaagtatcatttatgtcattttttatagtgtggaaggtcgtgaacttggaaaaatattcattagccggtggtttcagggtctggaatttatttgttacgtcatctgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA19G37550.1 (Glycine max), 5'ss of exon 2
AAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaatttgttcac-aagtatcatttat--gtcattttttatagtgtggaaggtcgtgaacttggaaaaatattcattagccggtggtttcagggtctggaatttatttgtt--acgtcatctgtag
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AAAAGTCACAATTGGGCCTTGGATAGAAAATGGGTTTTATTATGACTTCGACATGGAGCCTTTGACTGATAAAGATTTGAAGAGAATTAAGAAAGAGATGgtaagcagaaacagtccattaaatcttttcgaggggcctttttttatttttcttaatttcttttcatgcatctcaagcaaattatacactgcgtaccacgc---gaatgcgattcttgcatgttgtatgcag
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA20G13740.1 (Glycine max), 5'ss of exon 2
-------------------------------------------------------------AAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaatttgttcacaagtatcatttatgtcattttttatagtgtggaaggtcgtgaacttggaaaaatattcattagccggtggtttcagggtctggaatttatttgttacgtcatctgtag
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GCATACAATGTGCGCATGTGATTGCAATGGCAATGACTGTTCAAAAGCTTTACCCTGATGCAAAAGTCACAATTGGGGCTTGGATTGAAAATGGgttttactatgactttgatatagagcttttgactaataaagatttgaagagaattaagaaatagatggtaagcagagacagtccattaa-atcttttctat---------------------------------------------------------------------------------------------
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S34_213V6.1 (Physcomitrella patens), 5'ss of exon 3
AAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATATGGAG---CCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaat------ttgttcacaagtatc---atttatgtcattttttatagtgtggaag--gtc-------gtgaacttggaa--aaatattcattagccggtggtttcagggtctggaatttatttgttacgtcatctgtag
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---GGTAACGATCGGCCCTTGGATTGAGAAGGGCTTCTATTACGATTTTGATAAGGAAGAACCTTTTACAGAGACAGACTTGAAGAAGATCAAGAAAGAGATGgtgagtttattactcctctggatacagttatttaagcttaggtcttgcttcctactgtttttgttgtctttgtaaatgaccttgctcttagggttttgacagttctcgatgtggagaaattgaatttgtggagtgtg-cattcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720644|gb|FC070254.1|FC070254EST: ATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATG GATCGCATCATTGGTCGAAATTTACCACTGATTAGAGAAGAAGTTTCCAGA
genomic: ATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaa ... tcatctgtagGATCGCATCATTGGTCGAAATTTACCACTGATTAGAGAAGAAGTTTCCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAAAGTGACAATTGGTCCATGGATAGAAAATGGGTTTTATTATGATTTTGATATGGAGCCTTTGACAGATAAAGATTTGAAGAGGATCAAGAAAGAGATGgtgagtacaatttgttcacaagtatcatttatgtcattttttatagtgtggaaggtcgtgaacttggaaaaatattcattagccggtggtttcagggtctggaatttatttgttacgtcatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG