1 5' 3' | 2 5' 3' | 3 5' 3' |
GGTTCCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCGgtgagtcaatttttgatgcattatctactcttctcgtgtttcttggaatagaatatcaaaacccatcttgggttttacctaatgcttggaaagaatgtag...
species | Vitis vinifera |
transcript | Vv12s0055g01100.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCG GTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTCEST: gi|110398042|gb|EC964119.1|EC964119
genomic: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCGgtgagtcaat ... tgtggtttagGTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTC
EST: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCG GTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTCEST: gi|110372109|gb|EC936254.1|EC936254
genomic: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCGgtgagtcaat ... tgtggtttagGTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTC
EST: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCG GTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTC
genomic: TTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCGgtgagtcaat ... tgtggtttagGTTTCCATTTCTTCTAGTGGATAGAGTGATTGAATATACTCCTGGAGTTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCCCCGCATTTCCAACCGTGATGGATATTAATCAGATTCGTGAGATTTTGCCCCACCGgtgagtcaatttttgatgcattatctactcttctcgtgtttcttggaatagaatatcaaaacccatcttgggttttacctaatgcttggaaagaatgtag
- - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa