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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATTAGCTTCAATTATGTCAAATTTCTCTTCAATCACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAGgtaattgttttttgagtttaactaaatgttattctggctttttttttcttttttttttttgggttgctgttgttgtaattattgtgtaatttgatag

Basic information

species Vitis vinifera
transcript Vv12s0055g00900.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856427|gb|DT005482.1|DT005482
EST:     TCTCTTCAATCACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAG                         GTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG
genomic: TCTCTTCAATCACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAGgtaattgttt ... aatttgatagGTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG
EST: gi|351043163|gb|FQ451336.1|FQ451336
EST:     CACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAG                         GTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG
genomic: CACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAGgtaattgttt ... aatttgatagGTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG
EST: gi|71859699|gb|DT008754.1|DT008754
EST:     TCTCTTCAATCACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAG                         GTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG
genomic: TCTCTTCAATCACTACTGCTTCCAATCCAAATCCCAATAAGTCGATTGAGgtaattgttt ... aatttgatagGTGGCTCAACCTCCGAGTGATTCTGTTTCAAGCCTTAGTTTCAGTCCCAAG