Sequence
atgc intronic sequence ATGC exonic sequenceAAGGCACGTGAGGATCTATTGAAGTGCAAGGAACTTGGCCTATCAAAGAATGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTCATTCAGgttagattgtaattcaacattttgtatatatatgcacagtcattgatatatatcaatacaagtatgaacccatgtgttttactatctaattcctatgaatacatgaatcattggtggaagcatgcaggtgcattttcatgccttttttaactggcttgtgtttgaattttgtttgctttatag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G41540.1 (Glycine max), 5'ss of exon 9
AAGGCACGTGAGGATCTATTGAAGTGCAAGGAACTTGGCCTATCAAAGAATGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTCATTCAGgttagattgtaattcaacattttgtatatatatgcacagtcattgatatatatcaatacaagtatgaacccatgtgttttactatctaattcctatgaatacatgaatcattggtggaagcatgcaggtgcattttcatgccttttttaactggcttgtgtttgaattttgtttgctttatag
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AAGGCACGCGAGGGCCTACTGAAGTGCAAGGAGCTTGGTCTATCCGAGAATGAGTTAAAGAAGCTTTTGCCTATTGTGGATGCAAATTCATCTGATTCAGgtgatattttatctgaatttatttt-tgtgt-tgcagaaatgttcataaattcatatactaattatagcttttcttctgcag-----------------------------------------------------------------------------------------------------
upper sequence: Vv12s0055g00620.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G13280.1 (Glycine max), 5'ss of exon 9
AAGGCACGTGAGGATCTATTGAAGTGCAAGGAACTTGGCCTATCAAAGAATGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTCATTCAGgttagattgtaattcaacattttgtatatatatgcacagtcattgatatatatcaatacaagtatgaacccatgtgttttactatctaattcctatgaatacatgaatcattggtggaagcatgcaggtgcattttcatgccttttttaactggcttgtgtttgaattttgtttgctttatag
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AAGGCACGTGAAGGCCTACTGAAGTGCAAGGAGCTTGGTCTATCCGAGAATGAGTTAAAGAAGCTTTTGCCTATTGTGGATGCAAATTCATCTGATTCAGgtgatattttatctgaa---tttatttttgtgtaccagat-----atgttcataacttcatttactaatt-atagtttttcttctgcag----------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110364023|gb|EC927662.1|EC927662EST: TGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATTTGATTCAG GAGCTTTTGATGGCGTTCTTAAGCTTCTGGTTCAAGCAGGCAGAAGTCTCC
genomic: TGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTCATTCAGgttagattgt ... tgctttatagGAGCTTTTGATGGCGTTCTTGAGCTTCTGGTTCGAGCAGGCAGAAGTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGGCACGTGAGGATCTATTGAAGTGCAAGGAACTTGGCCTATCAAAGAATGAGATGAGGAAGCTTCTACCCATTGTAGATGCCAGCTCATCTCATTCAGgttagattgtaattcaacattttgtatatatatgcacagtcattgatatatatcaatacaagtatgaacccatgtgttttactatctaattcctatgaatacatgaatcattggtggaagcatgcaggtgcattttcatgccttttttaactggcttgtgtttgaattttgtttgctttatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA