1 5' 3' | 2 5' 3' | 3 5' 3' |
GATTTTCGGCTTTCTAATGCCATTTCAGATTGCCTTGAGTTGCTGGATTTTGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaagtatggtactttttttttgtctttcccatgttagatttctagttcaactagctaaaaaagttgattgtag
species | Vitis vinifera |
transcript | Vv12s0035g01900.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG GTAAAGATAACGGTACCGGCGATCTGGGGEST: gi|110356967|gb|EC920174.1|EC920174
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGG
EST: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG GTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGAEST: gi|110723592|gb|EE101078.1|EE101078
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGA
EST: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAG GTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATTGTTGA
genomic: TGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaa ... ttgattgtagGTAAAGATAACGGTACCGGCGATCTGGGGTCGGATTTGAAGACATGGTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTTTCGGCTTTCTAATGCCATTTCAGATTGCCTTGAGTTGCTGGATTTTGCAGCTGATGATCTGAGCTGGTCCCTTTCTGCCATTCAGAATCCTAAAGgtatatacaagtatggtactttttttttgtctttcccatgttagatttctagttcaactagctaaaaaagttgattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT