Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCTGGACAAGCATGCTGATTATGAAGCTATTGTGGATGGAGCAAATATTGGGCTCTACCAACAGAATTTTGCCAACGGTGAATTTAGTATTCCTCAGgttgtgcaacctaattccttgacttgtctccctcttttaaaacagtcattttatctgacccattgccctatttctgaatttttcaatagagcag

Basic information

species Vitis vinifera
transcript Vv12s0035g01850.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110390472|gb|EC955381.1|EC955381
EST:     TTGGGCTCTACCAACAGAATTTTGCCAACGGTGAATTTAGTATCCCTCAG                         CTTGATGCTGTTGTGAAAGAATTATATGATAGGAGCCAAAAGAAGCGGCCT
genomic: TTGGGCTCTACCAACAGAATTTTGCCAACGGTGAATTTAGTATTCCTCAGgttgtgcaac ... aatagagcagCTTGATGCTGTTGTGAAAGAATTATATGATAGGAGCCAAAAGAAGCGGCCT
EST: gi|34545414|gb|CF513646.1|CF513646
EST:     TTGGGCTCTACCAACAGAATTTTGCCAACGGTGAATTTAGTATTCCTCAG                         CTTGATGCCGTTGTGAAAGAATTATATGATAGGAGCCAAAAGAAGCGGCCT
genomic: TTGGGCTCTACCAACAGAATTTTGCCAACGGTGAATTTAGTATTCCTCAGgttgtgcaac ... aatagagcagCTTGATGCTGTTGTGAAAGAATTATATGATAGGAGCCAAAAGAAGCGGCCT