1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTGTCAACTTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgcttattcctttcggatctgctggtttcattatgaattgaaagatgtagtttcttatttccattaactaatgaagccttttgtctggcatac...
species | Vitis vinifera |
transcript | Vv12s0035g00760.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|71859709|gb|DT008764.1|DT008764
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|71857490|gb|DT006545.1|DT006545
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|110692902|gb|EE068663.1|EE068663
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: CAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|30134547|gb|CB919885.1|CB919885
genomic: CAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|30132474|gb|CB917813.1|CB917813
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|30125501|gb|CB910840.1|CB910840
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAAEST: gi|110708441|gb|EE085986.1|EE085986
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
EST: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAG CTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
genomic: TTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgc ... tttgctgcagCTCTCCAACATGGAAGTCTGGTTTCAGCGGCCAAAAGACATTGTTAGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGTCAACTTTCAGTCAGGCAGGTGAATCCTCGACAATATGTTGCAGAAATTCCACAGgtgtgtgtgcttattcctttcggatctgctggtttcattatgaattgaaagatgtagtttcttatttccattaactaatgaagccttttgtctggcatac
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