1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGCTGTGGAAAATTACAGTTCGATCTATGTTTTCTCTTTTGAGAACATGAGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaaccaatggaatataatttcttgaaaaggttttttcttttctttctttcgtttttttttcaaagaagagaaggtaaaagaaaagggaaccaattt...
species | Vitis vinifera |
transcript | Vv12s0034g01000.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAG GTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGTEST: gi|294965104|gb|GW836935.1|GW836935
genomic: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaacca ... tgattgtcagGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
EST: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAG GTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGTEST: gi|110372678|gb|EC936863.1|EC936863
genomic: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaacca ... tgattgtcagGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
EST: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAG GTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGTEST: gi|71868915|gb|DT017970.1|DT017970
genomic: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaacca ... tgattgtcagGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
EST: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAG GTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGTEST: gi|110361718|gb|EC925211.1|EC925211
genomic: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaacca ... tgattgtcagGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
EST: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAG GTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
genomic: AGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaacca ... tgattgtcagGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGTTCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCTGTGGAAAATTACAGTTCGATCTATGTTTTCTCTTTTGAGAACATGAGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTCAAATCTACCAGCAGgtaaaaaccaatggaatataatttcttgaaaaggttttttcttttctttctttcgtttttttttcaaagaagagaaggtaaaagaaaagggaaccaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaccaa