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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCTATGAGAGAGGAGACAAGTTTTACTTGTACACAGGCAGAGGACCTTCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttttcaattctaatatagcctcaagctattgcatttctgtggaacgtggatggataattctgaatcgtgtaaaatgtttagaatagtttacga...

Basic information

species Vitis vinifera
transcript Vv12s0028g03370.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G25740.1 (Glycine max), 5'ss of exon 2
ATGCCTATGAGAGAGGAGACAAGTTTTACTTGTACACAGGCAGAGGACCTTCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttttcaattc-taatatagcctcaagctattgcatttct--gtggaacgtggatggataattctgaatcgtgtaaaatgtttagaatagtttacga
| || |||||||| ||||| ||||| ||||||||||| ||  | |||||||| ||||| || ||||||||||| || ||| |||| ||||||||||| ||||  |||  |||    | |  |      | ||  |   | ||||     |||||  ||  |    | || ||||||  ||    || ||    ||   ||   
ACGCGTATGAGAGGGGAGATAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCTGAAGCCTTGCATTTGGGACACTTGATTCCCTTCATGTTCACTAAgtgagtgagttcttcgcgtttttcgattttaatttgaagaattttgaaatggaatttgacttttaatttgtgaatctagtgtgttgcttttg-taaactat--

upper sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G11390.1 (Glycine max), 5'ss of exon 2
ATGCCTATGAGAGAGGAGACAAGTTTTACTTGTACACAGGCAGAGGACCTTCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttttcaattctaatatagcctcaagctattgcattt---ctgtggaacgtggatggataattctgaatcgtgtaaaatgtttagaatagtttacga
| || || ||||| || |||||||| ||||||||||| ||  | |||||||| || || || ||||||||||| || ||| |||| ||||||||||| ||||  |||  |||    |   |      | ||  |   | ||||    ||   ||  ||  |    | || ||||||  ||    |||||    ||  |||   
ACGCGTACGAGAGGGGCGACAAGTTCTACTTGTACACCGGACGCGGACCTTCCTCCGAAGCGTTGCATTTGGGACACTTGATTCCGTTCATGTTCACTAAgtgagtgagttcttcgcgttttcgattttaactttcggaatttgaaatgaaaaatttgacttttaatttgtgaatctagtgtgttgtttttg-taaattat--

upper sequence: Vv12s0028g03370.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G04600.2 (Arabidopsis thaliana), 5'ss of exon 3
ATGCCTATGAGAGAGGAGACAAGTTTTACTTGTACACAGGCAGAGGACCTTCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgta--tgtgttttcaattctaatatagcctcaagctattgcatttctgtggaacgtggatggataattctgaatcgtgtaaaatgtttagaatagtttacga
| || |||||||||||||||||||| ||  | ||||| || ||||||||||| || || || |||||||||||||||||| ||||||||||||| ||||||||  || | |       ||| ||| | || |        ||| | |  |||   | | | |||  | ||   || |     ||  ||  ||| |||| |  
ACGCTTATGAGAGAGGAGACAAGTTCTATCTCTACACTGGAAGAGGACCTTCATCAGAAGCATTGCATTTGGGGCATTTGATTCCTTTCATGTTTACCAAgtaagtgagatcctggagctagtattgtcttac-------catgtttacggat--ttggtagattgtgcttgctcttt----atacttgaaatggtttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717337|gb|FC065270.1|FC065270
EST:     TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
EST: gi|110709548|gb|EE085106.1|EE085106
EST:     TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
EST: gi|71855398|gb|DT004453.1|DT004453
EST:     TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
EST: gi|294967200|gb|GW840075.1|GW840075
EST:     TCTTCTGAGGCTTTGCGTTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTCATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
EST: gi|110710091|gb|EE086125.1|EE086125
EST:     TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
EST: gi|71860975|gb|DT010030.1|DT010030
EST:     TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAA                         GTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA
genomic: TCTTCTGAGGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTCACCAAgtatgtgttt ... ctgcttgcagGTACTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTTACTGATGA