1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTGGAGCAGCTAGGTGTGGATAAAGCAGTGCCTTCAAGGATTTTAGAGATTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatgaaatcacatctcttcctaattctaccattcctgttattctgtacaaagtcatggatttgtttggtttctgtagaatttttgttgccagtagatct...
species | Vitis vinifera |
transcript | Vv12s0028g03100.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAA AAATATCGGTCCCATAGGAAGCATTTGCTGGCTCGGGAAGCTGAGGCGGCGEST: gi|30295668|gb|CB972462.1|CB972462
genomic: TTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatgaaatc ... atgtgtgcagAAATATCGGTCCCATAGGAAGCATTTGCTGGCTCGGGAAGCTGAGGCGGCG
EST: TTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAA AAATATCGGTCCCATAGGAAGCATTTGCTGGCTCGGGAAGCTGAGGCGGCG
genomic: TTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatgaaatc ... atgtgtgcagAAATATCGGTCCCATAGGAAGCATTTGCTGGCTCGGGAAGCTGAGGCGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGGAGCAGCTAGGTGTGGATAAAGCAGTGCCTTCAAGGATTTTAGAGATTATGGGAATCGATTGTCTCACTCGCCACAACATTGCTAGCCACCTTCAAgtatgaaatcacatctcttcctaattctaccattcctgttattctgtacaaagtcatggatttgtttggtttctgtagaatttttgttgccagtagatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc