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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttacttatggaaatataaaaattcattttttattttacttt...

Basic information

species Vitis vinifera
transcript Vv12s0028g02020.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G15420.1 (Glycine max), 5'ss of exon 2
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttac---ttatggaaatataaaaattc-attttttattttacttt--
 | ||||||||||||| ||||| || ||||||||||| || || ||||| | || ||| ||||| || || |||||||| ||||||||||||  |      | |   |  | || | |  |     | | ||  |||||  ||||||   | || ||| |  |    ||| | |||| | | |||  |  
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAATCTAGCTCgtgagtattac--aacatatagatagagaactagttta----ttttttcatgtttttttttaccgttgatagaacttcagtgcttctacttttgaatatacagtta

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G42900.1 (Glycine max), 5'ss of exon 2
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttacttatggaaatataaaaattcattttttattttacttt---
 | ||||||||||||| ||||| || ||||||||||| || || ||||| | || ||| ||||| || || |||| ||| ||||||||||||  |      | |   |  ||| || |  | ||   | |    | |||  |  |  || |    ||  ||  |  |    |  || |   |||   
ATAATGCTGGGACAAATAAAGCAGCATCTAGCAGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattac--aacatatagatagatagataga-tagatacacagctttattttttcattttttttaccattgaatgaacctcggtgcatctacttttgaa

upper sequence: Vv12s0028g02020.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G42890.1 (Glycine max), 5'ss of exon 2
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttacttatggaaatataa-aaattcattttttattttacttt-----
 | ||||||||||||||||||| || |||||| |||| || || ||||| | || ||| ||||| || || |||| ||| ||||||||||||  |    | | |   |  | || | |  |     | | || |||||| ||   | | |  ||| |  |    ||  | |||| | | |||  |     
ATAATGCTGGGACAAACAAAGCAGCATCTAGCGGCACTTCATTGAACACTAAGAGGCTGGATGATGATACTGAGAGTCTAGCTCgtgagtattac--aatatatagatagagaactagttta----tgttttcgtgttttctaccattgaaagaacttcagtgcatctacttttgaatatacaattatat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110376772|gb|EC941847.1|EC941847
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110385439|gb|EC949964.1|EC949964
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26261774|gb|CA812837.1|CA812837
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110709567|gb|EE085139.1|EE085139
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|37189291|gb|CF608640.1|CF608640
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30321073|gb|CD004335.1|CD004335
EST:     TTTAAACTCAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: TTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|71883230|gb|DT032285.1|DT032285
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110724742|gb|EE100846.1|EE100846
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110409136|gb|EC974792.1|EC974792
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30296972|gb|CB973766.1|CB973766
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30297030|gb|CB973824.1|CB973824
EST:     CCCCTCTTTAAACCCAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTCCCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|32269761|gb|CD718920.1|CD718920
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352790908|gb|FQ477356.1|FQ477356
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352790919|gb|FQ477367.1|FQ477367
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110392818|gb|EC957277.1|EC957277
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110726726|gb|EE102761.1|EE102761
EST:     CCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26262403|gb|CA813466.1|CA813466
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|351027078|gb|FQ439939.1|FQ439939
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352787307|gb|FQ477927.1|FQ477927
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26261581|gb|CA812644.1|CA812644
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGCACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110702508|gb|EE081304.1|EE081304
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|71882631|gb|DT031686.1|DT031686
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30136700|gb|CB922038.1|CB922038
EST:     ACNCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: AC-CTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110371463|gb|EC935506.1|EC935506
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352767842|gb|FQ466051.1|FQ466051
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110730082|gb|EE106758.1|EE106758
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110727035|gb|EE103368.1|EE103368
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110361544|gb|EC925026.1|EC925026
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110701590|gb|EE079338.1|EE079338
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110376285|gb|EC941335.1|EC941335
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110708355|gb|EE085804.1|EE085804
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110687528|gb|EE065040.1|EE065040
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110693957|gb|EE070642.1|EE070642
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30129260|gb|CB914599.1|CB914599
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26262731|gb|CA813794.1|CA813794
EST:     ACCTCTTTAAACCACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: ACCTCTTTAAA-CACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|34416272|gb|CF415026.1|CF415026
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110710400|gb|EE086700.1|EE086700
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|33405747|gb|CF211374.1|CF211374
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26261632|gb|CA812695.1|CA812695
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|32270667|gb|CD719826.1|CD719826
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110406514|gb|EC972090.1|EC972090
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|71889009|gb|DT038064.1|DT038064
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110714431|gb|EE091328.1|EE091328
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110721697|gb|EE098991.1|EE098991
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110730507|gb|EE107663.1|EE107663
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110427201|gb|EC993635.1|EC993635
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|34417096|gb|CF415850.1|CF415850
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|33409962|gb|CF215589.1|CF215589
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|18458670|gb|BM436948.1|BM436948
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352781833|gb|FQ469131.1|FQ469131
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|349826575|gb|FQ418666.1|FQ418666
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110411752|gb|EC977475.1|EC977475
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110707585|gb|EE084154.1|EE084154
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|46918198|gb|CN547527.1|CN547527
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|349827889|gb|FQ422757.1|FQ422757
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110428938|gb|EC995422.1|EC995422
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110715971|gb|EE090542.1|EE090542
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|22013757|gb|BQ798791.1|BQ798791
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|349824312|gb|FQ417723.1|FQ417723
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110701644|gb|EE079448.1|EE079448
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|352767910|gb|FQ466119.1|FQ466119
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110707359|gb|EE083701.1|EE083701
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110360974|gb|EC924420.1|EC924420
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110706291|gb|EE081688.1|EE081688
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110687300|gb|EE064600.1|EE064600
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|30134441|gb|CB919779.1|CB919779
EST:     TGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: TGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|83274543|gb|DV938640.1|DV938640
EST:     CAAGGAAGCTTGATGAAGAAACGGAGAATCCTGCTC                         ATGATCGAGTCCCAACTGAGCTGAAGAAAAGTTTCATGCAAGCTCGAATGG
genomic: CAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110383202|gb|EC947559.1|EC947559
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|22014900|gb|BQ799934.1|BQ799934
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|26262665|gb|CA813728.1|CA813728
EST:     GAGAATCTTGCTC                         ATGATCGAGCACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: GAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110687086|gb|EE064190.1|EE064190
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110387022|gb|EC951661.1|EC951661
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|110410201|gb|EC975879.1|EC975879
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
EST: gi|22014967|gb|BQ800001.1|BQ800001
EST:     CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTC                         ATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG
genomic: CACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatat ... ttgcgtgcagATGATCGAGTACCAACTGAGCTGAAGAAAAGTATCATGCAAGCTCGAATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCATGCTGGGACAAACAAAGCTGCTTCTAGCAGCACCTCTTTAAACACAAGGAAGCTTGATGAAGAAACGGAGAATCTTGCTCgtgagtatatcttggtttttgctttaataaattgcctggaagtatattggtgtttccttttacttatggaaatataaaaattcattttttattttacttt

- - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa