Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttatcttttattataagtgggaaatacttacgttaaagctttggagcag

Basic information

species Vitis vinifera
transcript Vv12s0028g01600.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g45820.1 (Oryza sativa), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagc----atagagaatatattgttttttgccttatcttttattataagtgggaaatacttacgttaaagctttggagcag------------------
||||||||| || |||||||| || ||||||||||| ||||| |||||||| || || || || ||||| ||| | || |||||||| |||||||||||||| ||     ||  |    | ||| ||||     | | | | | || ||     |   |     | || ||  | ||   ||                   
TGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCTGATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGACAGACAGgttagtttttatccactgaacattcttttggatgtgaacatctgttgtattctagtttttaactcattcaa-ttgtgacacaattaagtaaaaatgtttca

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G087598_T01 (Zea mays), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagca----tag--agaatatattgttttttgcctt--atcttttattataagtgggaaatact-tacgttaaagctttggagcag------------
|||||| || || |||||||| || ||||||||||| ||||||||| |||| |||||  | || || || ||| | || ||||| || ||||| ||||||||  |      | |   || | |||   |  |||| ||     || | || |   |  | |||  | |   ||      ||| |  |             
TGGTTTCGAGGGCAACACTGGAATTATTGTTATTGCTGCCACTAACCGGGCTGACATATTGGATTCCGCTTTACTTAGACCTGGGCGTTTTGATAGACAGgtttgttattttcgttggattctatctgtcattgcatttagatttctgttctgtctttgtaatgttgtctattgtttacttgcaaaaattcgagtctaac

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttatcttttattataagtgggaaatactta-cgttaaagctttggagcag
||| ||||| || ||||||||||| |||||  ||||||| ||||||||||| |||||||||||||||||||||||||| || || || ||||| ||||||||| |       | |||||| |    ||||| ||  |||  |  | | |  || |||| | | | |  |||||    |||
TGGGTTTGAGGGTAACACTGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGGGTCGGTTTGATAGACAGgtatg-------attatattatgaaatgcctcatgcttttgtgaatgagtaaattactaaacatcattgcttttt--cag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagaga-atatattgttttttgcctt-atcttttatt--ataagtgggaaatacttacgttaaagctttggagcag
||| ||||| || ||||| ||||| |||||  ||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||| |||||||||   ||   |  ||  | ||  |  ||| ||  |   | |||  || | ||   || |   || | || ||||| |  |||
TGGGTTTGAGGGTAACACAGGTATCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCGGCCTTGTTGAGACCTGGCCGATTTGATAGACAGgtattgattatgttatgaaatgcctaatgcttttgttaatgattaaattactgaacaaaaaaaacatcaatgcttttg--cag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA15G17070.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttat-cttttattataagtgggaaatacttacgttaaagctttggagcag
||| ||||| || || || ||||| ||||| |||||||| ||||||||||  ||||||||||| ||||| || || ||||| ||||||||||| || ||||||||       | ||||||      | | | || | |||||||  |  |  ||  | | |   ||  ||||| |  |||
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGgtaag-------attatattagcaaattcttaatgcgtttattaacaa-gcaaatcagtgaacatagtgcttttg--cag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttttttgccttatct-tttattataagtgggaaatacttacgttaaagctttggagcag
||| ||||| || || || ||||| ||||| |||||||| |||||||| |  ||||||||||| ||||| || || ||||| ||||||||||| |||||||||||       | ||||||      ||| | || | |||||||  |  |  ||    | |   ||  ||||| |  |||
TGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaag-------attatattagcaaatgcttaatgtgtttattaacaa-gcaaatcgttgaacatagtgcttttg--cag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaat---atattgtt-ttttgccttatcttttattataagtggga--aatacttacgttaaagctttggagcag
|||||||||||| ||||||||| | || ||  |||| || || || || |||||||||||||||||||| || |||||||| ||||| |||||| | ||||||      ||  ||   | |||| | | ||   | ||| | || ||    | |      | ||||| |  ||  | ||| ||||
TGGTTTTGAAGGTAACACTGGTGTTATCGTAGTTGCTGCAACCAATAGAGCAGACATTCTTGACTCTGCTTTGTTGAGGCCAGGACGGTTTGACCGGCAGgtactatctgattattacacattgatatgttttgtaatcctgtactactcctagagcttgtgcttacttataatttctggtgcag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: PP1S118_166V6.1 (Physcomitrella patens), 5'ss of exon 1
TGGTTTTGAAGGAAACACTGGTATAATTGTTATTGCAGCCACTAACAGGGCAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatagagaatatattgttt---tttgccttatcttttattataagtgggaaat--acttac-----gttaaagctttggagcag----------------
 ||||| ||||||||||||||| | ||||| ||||| ||||| |||||||| || ||||| ||| |||||||  |  | |||||| |||| |||||||||||||   |   |||   ||  |||   ||||    |||||  ||  | |  | | |    |||| |     ||||     ||   |  |                
CGGTTTCGAAGGAAACACTGGTGTGATTGTCATTGCTGCCACCAACAGGGCTGATATTCTCGACGCTGCCTTGCTTCGTCCTGGAAGATTCGACAGACAGgtaa-tgtcatgaaaccatgatttaaatttgaacaatcttcaatcctcatggtgtatctaacttgcaagatgttagtttcttaatgtggagacgacgtggcacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33401480|gb|CF207107.1|CF207107
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGGAGGA
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGA
EST: gi|294964481|gb|GW838284.1|GW838284
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTAGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|32268617|gb|CD717776.1|CD717776
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTANAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|32270237|gb|CD719396.1|CD719396
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|30321918|gb|CD005180.1|CD005180
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|27578510|gb|CB001205.1|CB001205
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|32247625|gb|CD713444.1|CD713444
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|30131049|gb|CB916388.1|CB916388
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|161709720|gb|FC060186.1|FC060186
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|32271757|gb|CD720916.1|CD720916
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTNAAAG-T
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTT-AAAGGT
EST: gi|32270882|gb|CD720041.1|CD720041
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGNGAAGGACAGAGATCTTANAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|27580424|gb|CB003119.1|CB003119
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATA
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATA
EST: gi|30326096|gb|CD009358.1|CD009358
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATAC
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATAC
EST: gi|30138067|gb|CB923405.1|CB923405
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|27754988|gb|CB035743.1|CB035743
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|30323533|gb|CD006795.1|CD006795
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTT
EST: gi|30128912|gb|CB914251.1|CB914251
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|37187954|gb|CF607305.1|CF607305
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|32250158|gb|CD715977.1|CD715977
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|18459578|gb|BM437856.1|BM437856
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|29785371|gb|CB342295.2|CB342295
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
EST: gi|30136898|gb|CB922236.1|CB922236
EST:     CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAG                         GTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT
genomic: CAGACATTCTTGACTCTGCCTTATTGAGGCCTGGACGATTTGACAGACAGgtaagcatag ... tttggagcagGTAACTGTTGATGTTCCTGATATACGGGGAAGGACAGAGATCTTAAAGGTT