Sequence
atgc intronic sequence ATGC exonic sequenceATTTTGTATTTGGATCTCAACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaagggtttttttgtcgatgtatgttgttttggttattattatcatgaaattttacaaattttaaataatattttattgcaatgattttgtgtaccattacatgctatttatttatttggtgaattttattttattttttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA16G09890.1 (Glycine max), 5'ss of exon 1
-------------------------ATTTTGTATTTG-GATCTC----AACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaagggtttttttgtcgatgtatgttgttttggttattattatcatgaaattttacaaattttaaataatattttattgcaatgattttgtgtaccattacatgctatttatttatttggtgaattttattttattttttttgcag
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TCTTCTTCTTCTTCTTCTTCTTCTCACTTTTTACCTAAGATTTTGTGGAACATGTCCGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaattctctcttat-tatacaattt-gattttcttttttgaatcattttgcta---taaatcgttgtttttgtccaata-----gaatacacttgaatgtcctt-------------------------------------
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G32260.1 (Glycine max), 5'ss of exon 1
--------------------------ATTTTGTATTTGGATCTC----AACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaa--gggtttttttgtcgatgtatg--ttgttttggttattattatcatgaaattttacaaattttaaataatattttattgcaatgattttgtgtaccattacatgctatttatttatttggtgaattttattttattttttttgcag
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AATAGAGAACTGCGTAGCGACCCATCAGAGAAGATCGCGATCTTCTGAAACATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaattctctcatagggatagggatagggatagttgctccaatc-tgttaccccatacgcattccgcaacttttgaagccccatattgtaatttcc--------------------------------------------------
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA03G22220.1 (Glycine max), 5'ss of exon 1
-------------------------ATTTTGTATTTGG-ATCTC----AACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaag-ggtttttttgtcgatgtatgttgttttggttat-tattatcatgaaattttacaaattttaaataatattttattgcaatgattttgtgtaccattacatgctatttatttatttggtgaattttattttattttttttgcag
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TTATTTGCGGTTTCTTCTTCTTCTCACGTTCTACCTAACATTTTCTAAAACATGTCTGGGGAAGAGGAAGAAAACGCCGCAGAGCTCAAAATTGGAGACGgtaattaaactctctctctctctctctctctctctcaatctgttacaccgtcattacgcaacttttgaa--accccatattgcaat----ttgtaaacttttcctt-------------------------------------------
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G09920.1 (Arabidopsis thaliana), 5'ss of exon 1
-----------------------------ATTTTG-TATTTGGATCTCAACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaagggttt--ttttgtcgatgtatgttgttttggttattattatcatgaaattttacaaattttaaataat--attttattgcaat--gattt---tgtgtaccattacat-----gctatttatttatttgg----------tgaattttat----tttattttttttg-cag---
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GAGGCAGAACCAAAAAACTTTAGGGTTCGATTTCGCTCCTTGGTAATCACCATGTCCGGAGAAGAAGAAGAGAACGCCGCCGAACTCAAGATCGGAGATGgtacttctctattctcttcgccatatcccccgctgtgtacc-tcaaaattagggtttctttgcctcatcgaattgatcttaattcaatacgatttaattgagcttaactgtatcgaaaatcccttaattatttgagatttatcatcgaaattgatgggttttattctctttgacaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419235|gb|EC985447.1|EC985447EST: CATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATG AATTTTTGAAGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTG
genomic: CATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaagggttt ... ttttttgcagAATTTTTGAAGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTTGTATTTGGATCTCAACATGTCCGGAGAAGAAGAGGAAAACGCCGCGGAGCTCAAAATTGGGGATGgtaagggtttttttgtcgatgtatgttgttttggttattattatcatgaaattttacaaattttaaataatattttattgcaatgattttgtgtaccattacatgctatttatttatttggtgaattttattttattttttttgcag
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA