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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCAGTGGCAGTCACTCACATGCATGCTTCACACAGCTGTGCCGAAGGCTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactctctctcattaattcaccatattttcttaattaatcatatttgtgattatgtgcctttaataatttgcttaggggctcatatatttatttta...

Basic information

species Vitis vinifera
transcript Vv12s0028g01360.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71855526|gb|DT004581.1|DT004581
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTTCGCTAATGCTG
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTG
EST: gi|30324102|gb|CD007364.1|CD007364
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|32267841|gb|CD717000.1|CD717000
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|32270623|gb|CD719782.1|CD719782
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|28963567|gb|CB342600.1|CB342600
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|30326328|gb|CD009590.1|CD009590
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|32249128|gb|CD714947.1|CD714947
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|30327945|gb|CD011207.1|CD011207
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
EST: gi|32272513|gb|CD721672.1|CD721672
EST:     CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCA                         GCATACAATGTTACGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA
genomic: CTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactct ... atatttgcagGCATACAATGTTTCGCTAATGCTGTGGCGTGATGCACTTCTGGTGGATCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATCAGTGGCAGTCACTCACATGCATGCTTCACACAGCTGTGCCGAAGGCTGCCTACTCATTGAGAACGTGGCAAGGCCTCTCCACATTCAAATTCCCAgtgagactctctctcattaattcaccatattttcttaattaatcatatttgtgattatgtgcctttaataatttgcttaggggctcatatatttatttta

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