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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGGAAGATGAAGGCAGCTAAGGGTGCTTTTGATGCTAGCATAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagggtttcatttaagttcgtttctttttcctgcatttgatgccatgaaaagttgagtatttcaatttagtcggcatgttctcctcttgcag

Basic information

species Vitis vinifera
transcript Vv12s0028g01100.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265252|gb|CA816315.1|CA816315
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110730925|gb|EE108561.1|EE108561
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|37184287|gb|CF603641.1|CF603641
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110381894|gb|EC937946.1|EC937946
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|26263992|gb|CA815055.1|CA815055
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110720549|gb|EE096568.1|EE096568
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG
EST: gi|110370834|gb|EC934386.1|EC934386
EST:     TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGG                         TTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTTGGAAG
genomic: TAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagg ... cctcttgcagTTCTCTTTTGGCGCTATAAATTCTGAAACTCTACTAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGGAAGATGAAGGCAGCTAAGGGTGCTTTTGATGCTAGCATAGATGTTGGTATAACCTTGTTTGATACTGCTGAAGTTTATGGCTCAAGGgtagggaagggtttcatttaagttcgtttctttttcctgcatttgatgccatgaaaagttgagtatttcaatttagtcggcatgttctcctcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG