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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCAAGCATACAGCGACGAGAAACTGGGAGGCGTGGCGAGAGAAGCCAAGGAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaacagacagaagagttacaattgtccgttcttatgtgtgtttaatcattgtattttgataattggattcag

Basic information

species Vitis vinifera
transcript Vv11s0118g00780.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110726595|gb|EE102512.1|EE102512
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|110404473|gb|EC969583.1|EC969583
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30251926|gb|CB969659.1|CB969659
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|26265459|gb|CA816522.1|CA816522
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|110691294|gb|EE069228.1|EE069228
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30323328|gb|CD006590.1|CD006590
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|87584108|gb|DY473390.1|DY473390
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGNCA-GGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGG
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAG-CAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGG
EST: gi|110723758|gb|EE101436.1|EE101436
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|71886262|gb|DT035317.1|DT035317
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30132382|gb|CB917721.1|CB917721
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30125206|gb|CB910545.1|CB910545
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30134113|gb|CB919451.1|CB919451
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGA
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGA
EST: gi|30321557|gb|CD004819.1|CD004819
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30125878|gb|CB911217.1|CB911217
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|30251724|gb|CB969457.1|CB969457
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|71869695|gb|DT018750.1|DT018750
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|110391960|gb|EC957033.1|EC957033
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|71875649|gb|DT024704.1|DT024704
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|71866756|gb|DT015811.1|DT015811
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|37184267|gb|CF603621.1|CF603621
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|71873465|gb|DT022520.1|DT022520
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
EST: gi|18459703|gb|BM437981.1|BM437981
EST:     GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAG                         GAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT
genomic: GAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaaca ... ttggattcagGAATAAGAGCAAGGAAAGCTTGAGGATAGTAGATGGAAGAGCCATGGTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCAAGCATACAGCGACGAGAAACTGGGAGGCGTGGCGAGAGAAGCCAAGGAAAGATTGGATGAGAGGCTGAGAACCCAAAGAAAATCAGAACCCACAAGgtaattaacagacagaagagttacaattgtccgttcttatgtgtgtttaatcattgtattttgataattggattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA