Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCTGTCTCCACATTCATCCTCCTTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtctcagcaactctcaaattttcgttctgataaatatttgattttgttttgttttgttttgttttgttttcttcagtctgaaattgaatcatttctattttgtgtag

Basic information

species Vitis vinifera
transcript Vv11s0118g00670.t01
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134455|gb|CB919793.1|CB919793
EST:     TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|37187972|gb|CF607323.1|CF607323
EST:     TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|77580814|gb|DV219318.1|DV219318
EST:     CAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: CAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|110429198|gb|EC995687.1|EC995687
EST:     TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|71869827|gb|DT018882.1|DT018882
EST:     ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|34319412|gb|CF372166.1|CF372166
EST:     GTCCGCCTCTCTGCTCTCAGGCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: GTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|110706377|gb|EE081851.1|EE081851
EST:     CCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: CCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|71865933|gb|DT014988.1|DT014988
EST:     ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|34543799|gb|CF512031.1|CF512031
EST:     TTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|110361702|gb|EC925195.1|EC925195
EST:     ATTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|77577814|gb|DV217659.1|DV217659
EST:     ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: ATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|352795130|gb|FQ477240.1|FQ477240
EST:     TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: TTTTTTGCATCGTCCGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|32460994|gb|CD802168.1|CD802168
EST:     CAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGCGGGCGAGTCGCTCTCGTCAACTACG
genomic: CAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGAT--CGGGCGAGTCGCTCTCGTCAACTACG
EST: gi|71885713|gb|DT034768.1|DT034768
EST:     CGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGGTCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: CGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|351017039|gb|FQ424466.1|FQ424466
EST:     ACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: ACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|110428543|gb|EC995018.1|EC995018
EST:     GCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: GCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
EST: gi|110424520|gb|EC990883.1|EC990883
EST:     CGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATG                         CCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC
genomic: CGCCTCTCTGCTCTCAGCCACGCCCAGGCCAAAATGgtgagtgtct ... ttttgtgtagCCTTTCAAGCGGTACGTGGAGATCGGGCGAGTCGCTCTCGTCAACTACGGC