1 5' 3' | 2 5' 3' | 3 5' 3' |
AGAATCAAGTGCTTGACTGGTCATATCGCTTGTTTCTCAGGCTACAACCAGTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttatgaacaatgttgaatgagggaagcttttcccttatattgatcatgaactttggtttatttttcttgcag
species | Vitis vinifera |
transcript | Vv11s0118g00390.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACCCAACTGAGTTTAG AGAGGTCTTAGATGAATATGGCACAAAGGTAAAAATTATAATGGATGTTCTEST: gi|71860410|gb|DT009465.1|DT009465
genomic: ACCCAACTGAGTTTAGgtacctttat ... tttcttgcagAGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCT
EST: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAG AGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCTEST: gi|110405393|gb|EC970934.1|EC970934
genomic: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttat ... tttcttgcagAGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCT
EST: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAG AGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCTEST: gi|110697777|gb|EE075154.1|EE075154
genomic: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttat ... tttcttgcagAGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCT
EST: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAG AGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCTEST: gi|71885176|gb|DT034231.1|DT034231
genomic: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttat ... tttcttgcagAGAGGTCTTAGATGAATATGGCACAAAGGTAAAGATTATAATGGATGTTCT
EST: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAG AGAGGTCTTATATGAATATGGC
genomic: GTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttat ... tttcttgcagAGAGGTCTTAGATGAATATGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATCAAGTGCTTGACTGGTCATATCGCTTGTTTCTCAGGCTACAACCAGTGGATCAAAGAAAGCTTCGACTTTGGCCAGAGAACCCAACTGAGTTTAGgtacctttatgaacaatgttgaatgagggaagcttttcccttatattgatcatgaactttggtttatttttcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA