Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATTCTGAAGAATGCAATATATGATTATTTTGATGCCAATTACTCAAACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccattaagaaataaaatagaaattgtatgcttgctttttttttttttttcactgttttgagccatacgttgcactatttagaacttgtattatc...

Basic information

species Vitis vinifera
transcript Vv11s0103g00120.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0103g00120.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT3G58140.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGAATTCTGAAGAATGCAATATATGATTATTTTGATGCCAATTACTCAAACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccattaagaaataaaatagaaattgtatgcttgctttttttttttttttcactgttttgagccatacgttgcactatttagaacttgtattatc
||| ||  | || || || || || ||||| |||||| |||||||||||||||| ||||| ||||| ||  |||||| ||| || ||  |||||||  | ||  |    | |  |   ||  | | |  | | |    |  | |   ||  |||||| |||  | |    |   ||    ||                  
TGGTATCTTAAAAAACGCTATCTACGATTACTTTGATTCCAATTACTCAAACAAGTTTGAGAAGTTCGAAGACCTTTCCCCAATTGTTACCACAAAGCAAgtacgttt-tcagtactcaagtttgcatctttctagaag--tatcacttggttttcaatgtgatcattattggtttttggtaccag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352798745|gb|FQ478380.1|FQ478380
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|352790555|gb|FQ478194.1|FQ478194
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|77578106|gb|DV217823.1|DV217823
EST:     ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349825743|gb|FQ421842.1|FQ421842
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351054533|gb|FQ452009.1|FQ452009
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351044982|gb|FQ449236.1|FQ449236
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGAGGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|352790299|gb|FQ481498.1|FQ481498
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349813045|gb|FQ411285.1|FQ411285
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349819738|gb|FQ402675.1|FQ402675
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AACTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351045887|gb|FQ441270.1|FQ441270
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351027076|gb|FQ439937.1|FQ439937
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349808821|gb|FQ406671.1|FQ406671
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351045846|gb|FQ441031.1|FQ441031
EST:     ACAAATTTGGTAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351032114|gb|FQ460371.1|FQ460371
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351012743|gb|FQ430306.1|FQ430306
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|352786352|gb|FQ478961.1|FQ478961
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351053292|gb|FQ459160.1|FQ459160
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGAGGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351049456|gb|FQ450057.1|FQ450057
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGAGGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|294965549|gb|GW839120.1|GW839120
EST:     ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351048459|gb|FQ448733.1|FQ448733
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|352764072|gb|FQ467642.1|FQ467642
EST:     ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351032730|gb|FQ462444.1|FQ462444
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|352789829|gb|FQ478644.1|FQ478644
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351052538|gb|FQ456386.1|FQ456386
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349807616|gb|FQ402007.1|FQ402007
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351048130|gb|FQ442100.1|FQ442100
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGCTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351052564|gb|FQ456412.1|FQ456412
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351043334|gb|FQ451386.1|FQ451386
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351018426|gb|FQ439238.1|FQ439238
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|33406238|gb|CF211865.1|CF211865
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351027010|gb|FQ439870.1|FQ439870
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351019220|gb|FQ429380.1|FQ429380
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349815992|gb|FQ403595.1|FQ403595
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349808786|gb|FQ406636.1|FQ406636
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349814979|gb|FQ410202.1|FQ410202
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|349830653|gb|FQ416951.1|FQ416951
EST:     ACAAATTTGATAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
EST: gi|351038109|gb|FQ465226.1|FQ465226
EST:     ACAAATTTGGTAAGTTTGACGACCTTTGCCCCATAGTCTCCACAAAAGAG                         AATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT
genomic: ACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccat ... cttcttgcagAATTTTGATGATGTTTTGGTTCCTCCTGATCACATCAGTAGGAGTTACAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAATTCTGAAGAATGCAATATATGATTATTTTGATGCCAATTACTCAAACAAATTTGATAAGTTTGACAACCTTTGCCCCATAGTCTCCACAAAAGAGgtttgaccattaagaaataaaatagaaattgtatgcttgctttttttttttttttcactgttttgagccatacgttgcactatttagaacttgtattatc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaa