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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATTAAGTTCTCAAATTATTAAAGCAACTGGAGTGGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGTTGGCAAGCCATgtatggtgctcctgttcaattctttttttcaactgcaattacatgtttttttgttttttgtgttacttttgtgtagagctgcttaggtggttctactacatgatgggattatcagtgattccacatcctctctctctttgattgtcatgataaggttgtgaattcatgaatttgctttgttcttgtag

Basic information

species Vitis vinifera
transcript Vv11s0065g00900.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0065g00900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA04G24950.2 (Glycine max), 5'ss of exon 3
TCCATTAAGTTCTCAAATTATTAAAGCAACTGGAGTGGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGTTGGCAAGCCATgtatggtgctcctgttcaattctttttttcaactgcaattacatgtttttttgttttttgtgttacttttgtgtagagctgcttaggtggttctactacatgatgggattatcagtgattccacatcctctctctctttgattgtcatgataaggttgtgaattcatgaatttgctttgttcttgtag
|||||||||||||||||| || |||||||| |||||||| || ||||||||||||||||| |||||||||||| |||| || || ||||| || |||||||||||  | |    ||   ||  | ||| ||  | | | |   |  | | |   | | | | | ||        | |    |  |       |    |  ||   | | | |  |   ||  | |    ||   | |  |  |  | |  |    |    |||  |||  | |  |||||| ||| ||
TCCATTAAGTTCTCAAATAATCAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATgtatgcagttttgattggttttatgtttccattttccaattgttactctctctctctctctctcacacacacacacacacacacacaca--cccgacagttgtctgaactctttgaagtttgaaacttactgggt-taagtctaactttctgttataac-aatatatgtttctattttgttgttgcag

upper sequence: Vv11s0065g00900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G30030.1 (Glycine max), 5'ss of exon 3
TCCATTAAGTTCTCAAATTATTAAAGCAACTGGAGTGGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGTTGGCAAGCCATgtatggtgctcctgttcaattctttttttcaactgcaattacatgtttttttgttttttgtgttacttttgtgtagagctgcttaggtggttctactacatgatgggattatcagtgattccacatcctctctctctttgattgtcatgataaggttgtgaattcatgaatttgctttgttcttgtag
||||||||| |||||||| ||||||||||| |||||||| || |||||||||||||| || |||||||||||| |||| || || ||||| || |||||||||||    |    ||   ||  | ||| |   |  || |   || | | |   | | | |   ||        | |    |    || ||   |   | |  ||   ||    |  | |        |   |||  ||   ||  || |         ||||  |||  | |  |||||| ||| ||
TCCATTAAGCTCTCAAATAATTAAAGCAACAGGAGTGGTTACGAAGACTGCTTGGGCCGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATgtatgcaattttgattggttttatgtttccctttttaaattgttgctctctctctctctctcacacacacagacacacacacaccagttgtctgaactctt--tgaagttg---gaaacttattgggttaagtctaattttctgctataa---------gaatatatgtttgtattttgttattgcag

upper sequence: Vv11s0065g00900.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G30360.1 (Arabidopsis thaliana), 5'ss of exon 2
TCCATTAAGTTCTCAAATTATTAAAGCAACTGGAGTGGTCACCAAGACTGCTTGGGCAGGGGCTGCATATAATCTGCTATTATACATGTTGGCAAGCCATgtatggtgctcctgttcaattctttttttcaactgcaattacatgtttttttgttttttgtgttacttttgtgtagagctgcttaggtggttctactacatgatgggattatcagtgattccacatcctctctctctttgattgtcatgataaggttgtgaattcatgaatttgctttgttcttgtag
||| ||||||||||||||| |||||||||||||||| || || |||||||||||||| || ||||| ||||||||  |  |||||||| |||| || ||||||||         | | |||| || ||    || | ||||  |  ||  ||   | |  || || |      || |     || | |||  |                                                                                               
TCCGTTAAGTTCTCAAATTGTTAAAGCAACTGGAGTTGTTACAAAGACTGCTTGGGCTGGAGCTGCTTATAATCTTTTGCTATACATGCTGGCTAGTCATgtatga-------atcccattccttctt----cttccattatttcattccttaaatgtgatgataatcaaagctacaatgtttttgttgggacag---------------------------------------------------------------------------------------------