Sequence
atgc intronic sequence ATGC exonic sequenceAGGAGTGATAGATGAGAATGTAAAGCCAGGTTACAAGACAACACAAGTGGCCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGgtattttcaggacttatccttcttatctctgtgtacacattttcttcctatatgccaatttatagccatcctgcctatagatatgataagggaggctttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA05G36500.2 (Glycine max), 5'ss of exon 2
AGGAGTGATAGATGAGAATGTAAAGCCAGGTTACAAGACAACACAAGTGGCCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGgtattttcaggacttatcctt-cttatctctgtgtacacattttcttcctatatgccaatttatagccatcctgcctatagatatgataagggaggctttt-
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AGGCGTCATAGACCATAGCGTGAGGTCGGGTTACAAGTCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGCGATAGGGAATGGCTCgtacgtaactcacttttccctacttctcttgtaacatccaactcattttaatgcac-agttaactgccattggacattttaac-taatgaggtcgtgacata
upper sequence: Vv11s0065g00470.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA08G03070.1 (Glycine max), 5'ss of exon 2
AGGAGTGATAGATGAGAATGTAAAGCCAGGTTACAAGACAACACAAGTGGCCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGgtattt--tcaggacttatcctt-cttatctctgtgtacacattttcttcctatatgccaatttatagccatcctgcctatagatatgataagg--gaggctttt
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AGGCGTCATAGACCATAGCGTGAGGTCGGGTTACATGTCCACTGAAGTCGCCATTAAGGAACTTAATCGCGAAGGATTTCAAGGAGATAGAGAATGGCTCgtacgtaactcttacttttccttacttctcttgtagcattcaactcgttttaatgcac-agttaattgccattgaacattttaat-taatgaggtcgtggca---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718991|gb|FC067611.1|FC067611EST: CCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTG GCGGAAGTCAACTACTTAGGGCAGCTCAGTCACCCAAATCTCGTGAAGCTC
genomic: CCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGgtattttcag ... tcttttgcagGCGGAAGTCAACTACTTAGGGCAGCTCAGTCACCCAAATCTCGTGAAGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAGTGATAGATGAGAATGTAAAGCCAGGTTACAAGACAACACAAGTGGCCATTAAGGAGCTTAATCCAGAAGGTTTTCAAGGCGATAGAGAATGGCTGgtattttcaggacttatccttcttatctctgtgtacacattttcttcctatatgccaatttatagccatcctgcctatagatatgataagggaggctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaggg