Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATTTTGTTTACTCGAATGTTCTCTTCGCTCTTTGGAAACCGAGAAGCTCGGATCCTCGTTCTCGGCCTTGACAATGCGGGGAAAACCACAATTCTCTgtatggttctttgattctaatcttacccttttcttgttttgcatttctgtgatttgggttttaggtggttgctgatttgattcgagttttgttcag

Basic information

species Vitis vinifera
transcript Vv11s0052g01720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT2G24765.1 (Arabidopsis thaliana), 5'ss of exon 1
GGGATTTTGTTTACTCGAATGTTCTCTTCGCTCTTTGGAAACCGAGAAGCTCGGATCCTCGTTCTCGGCCTTGACAATGCGGGGAAAACCACAATTCTCTgtatggttctttgattctaatcttacccttttcttgt---tttgcatttctgtgatttgggttttaggtggttgctgatttgattcgagttttgttcag------------------------
|| || || || || || |||||||||||  ||||||| |||  ||||||||| |||||||| ||||| || |||||||| || ||||||||||| |||||||   |||  ||  || |   ||  | || | |  |   ||||   ||  ||   | ||||||| | |  | | |  |||  || |||||  ||| |                         
GGAATCTTATTCACGCGGATGTTCTCTTCCGTCTTTGGTAACAAAGAAGCTCGAATCCTCGTCCTCGGTCTCGACAATGCTGGAAAAACCACAATCCTCTgta-aattcactgcctcaatctttcgcattgtgtaatagatttgatatttagtagctagggtttttgat--tcgatcgttt--tttgagttgcgttgatgtttttgattctctgtgattccag