1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AGAAATGCTCAAATGAAGATCCTCGATCCCGATACCGGTGCCTCTCTTCCCCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagatcttatctacagtaattctattaccttccgattttatctgatccaattactataacggaattgaatactttgaattataattaattttttt...
species | Vitis vinifera |
transcript | Vv11s0052g01090.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352763350|gb|FQ471662.1|FQ471662
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|34544649|gb|CF512881.1|CF512881
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|30321211|gb|CD004473.1|CD004473
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352763804|gb|FQ473507.1|FQ473507
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: GGCCTTCAGATCCTGAAAG GTTATCTGAATGATCCAGAGGCCCCAGAAAGAACCATAGATAAAGAAGGATEST: gi|352773557|gb|FQ472339.1|FQ472339
genomic: GGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33409507|gb|CF215134.1|CF215134
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|110380128|gb|EC945372.1|EC945372
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|110383417|gb|EC947790.1|EC947790
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33402238|gb|CF207865.1|CF207865
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352764855|gb|FQ471915.1|FQ471915
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352781213|gb|FQ466526.1|FQ466526
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: AGGCCATCAGATTCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAEST: gi|352769074|gb|FQ471022.1|FQ471022
genomic: AGGCCATCAGA-TCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGA
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|30320706|gb|CD003968.1|CD003968
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33403621|gb|CF209248.1|CF209248
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352773482|gb|FQ472264.1|FQ472264
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: ATCAGATCATGAAAG GTTATTTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352776545|gb|FQ474847.1|FQ474847
genomic: ATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352767962|gb|FQ466171.1|FQ466171
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: ATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352768319|gb|FQ469494.1|FQ469494
genomic: ATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|110421851|gb|EC988154.1|EC988154
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352782065|gb|FQ469363.1|FQ469363
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33409263|gb|CF214890.1|CF214890
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352774138|gb|FQ474661.1|FQ474661
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352778153|gb|FQ468815.1|FQ468815
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCGGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|110690401|gb|EE067466.1|EE067466
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352769542|gb|FQ468470.1|FQ468470
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|352764547|gb|FQ472904.1|FQ472904
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33402316|gb|CF207943.1|CF207943
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|110382018|gb|EC938266.1|EC938266
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGATEST: gi|33403698|gb|CF209325.1|CF209325
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
EST: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAG GTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
genomic: CCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagat ... tattgtttagGTTATCTGAATGATCCAGAGGCCACAGAAAGAACCATAGATAAAGAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAATGCTCAAATGAAGATCCTCGATCCCGATACCGGTGCCTCTCTTCCCCGGAATCAGCCCGGAGAAATTTGCATCCGAGGCCATCAGATCATGAAAGgtatgcagatcttatctacagtaattctattaccttccgattttatctgatccaattactataacggaattgaatactttgaattataattaattttttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacggaat