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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAGTAATGTTTCTGGATTATGATGGGACTCTTTCTCCAGTTGTTGATGGTCCTGACCGTGCTCTGATGTCTGATGCTATAATAGAATGTTTCTCTTTAgtagtatgtgcaaagagttctttccttccctttccgaccctatgttgacattgcatttaaataatttgttgtcatatgtgatcaattataaaag

Basic information

species Vitis vinifera
transcript Vv11s0037g00720.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT4G12430.1 (Arabidopsis thaliana), 5'ss of exon 4
---------------------GATAGTAATGTTTCTGGATTATGATGGGACTCTTTCTCCAGTTGTTGATGGTCCTGACCGTGCTCTGATGTCTGATGCTATAATAGAATGTTTCTCTTTAgtagtatgtgcaaagagttctttccttccctttccgaccctatgttgacattgcatttaaataatttgttgtcatatgtgatcaattataaaag
                     ||| |   | ||||| ||||||||||| |||||||||||| | ||||||| |||||| |||||  | |||||||||||  ||||| || |     |||| ||  ||| | |       | ||   ||   | |  | |  |||  | |   |||   |||| |  ||||| |    | |||||  | |      
AGCTCAAGCAAAGAAGAAAAAGATTGCTGTATTTCTAGATTATGATGGTACTCTTTCTCCAATAGTTGATGATCCTGATCGTGCCATCATGTCTGATGCAgtaata-aacgcaaaccttttgtc-tat-taccttactctgttctgttttttgtgtggct-tatagt-atgatgc---taaaaagattgttttttcttttgatctttcag-----