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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag

Basic information

species Vitis vinifera
transcript Vv11s0037g00210.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os09g38530.1 (Oryza sativa), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgt-tagagttcttaatactttagtgatcctcctttatatccttttcctg-tatgcagtttattagtttctaacag-aagctgtttgttgcag------
 || || |||||||  |||   |||||||| || ||||||||||| || ||||| ||||| |||||||| |||||||| ||||| |||||||| ||||||||  ||   | ||   | ||| |||   |       ||||| |||||    |  |||||  || ||   | | |  ||  |  || ||||||  ||      
TTACTCCCTTCCTTTCTGCAAGCCAGAAACTATCGTTGACAGTGCTGAAAATCTCGGTGAGGTTCTTCGTGGTGATCGCATTGAGAACTCTCCATATGTGgttagtaccgggtaactcatattttgaag-------tttatgtccttgaagtaatatgcc-ttaatctctgtttgccatcattctttttgtttgagctacag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G458845_T01 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaa--gctgtttgttgcag---------
 || |||||||||| ||||   ||| | |  |||||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||||| ||   || |         | |   || | ||||| ||   || |  |||||  | |   | || |  || |      | ||||| | |            
TTACTCTCTTCCTTTTTGCAAGCCAAACATGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgctagtcacatattcacctttgtaat-ttgtaatgtattaaatcactgagctgttatctactttgttgtttctcgtttgtgctatag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G180575_T01 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtc--tgttagagttct-----taatactttagtgatcctcctttatatccttttcctgtatgcagt--ttat-tagtttctaacagaagctgtttgttgcag
 || ||||||||||  ||    ||| | || |||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||||  |  |||| | ||     | | |  ||    ||  |  ||| ||   |        |   |||  | ||  | ||| |      |  | | ||||| ||
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaatttgtaatgtaccaaatcacttagtcgtcatgcactttgtcgttttacgtttgtgttgtag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G046005_T02 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtt-tgttgcag-----------
 || ||||||||||  ||    ||| | || |||||||||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||||||| ||   || |         | |   || |  | || ||   || |  ||||  ||  | | |   |  | |   |   ||   | || |             
TTACTCTCTTCCTTTCTGTAAACCAAACACGATAGTTGACAGTGCAGAGAATCTTGGAGAAGTTCTGCGTGGTGATCGCATTGAGAACTCTCCTTATGTGgtcagtactagattactgcttgtcacatattcagcattgtaat-ttgtaatgtac-caaatcactgagtcgtcatgcactttgccgttttacgtttgtgttgtag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G146951_T01 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag
||||||||| || |  |||   || || |||||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||| |||  ||| ||||    |||    | | || ||    ||  |   | |      ||| |  ||| |   ||   |  | |    |  | ||| || |||
CTATTCTCTCCCATTCTGCAAGCCGGATACCATAGTTGACAGTGCAGAAAATCTCGGTGAAGTTCTTCGTGGAGATCGCATTGAAAACTCTCCCTATACGgtttgttct--ttcactgtgcattggtttatctgatcagtgtttgacacct-tgggcactagtttgactgttgagcatatatatttttttcag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G039811_T01 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgt----tagagttcttaatactttagt-gatcctcctttatatccttttcctgta-tgcagtttattagtttctaacagaagctgtttgttgcag
 || || ||||| |  |||   |||||  |||||||||||||||| || ||||| || || |||||||| || ||||| ||||| |||||||||||||||||  ||    || |   | ||| |  ||| | ||   | | |  |    |     |||   | | ||| ||  ||||| |  |    | |  | |  ||
TTACTCCCTTCCATTCTGCAAGCCAGATGCCATAGTTGACAGTGCCGAAAATCTCGGGGAGGTTCTTCGTGGCGATCGCATTGAGAACTCTCCTTATGTGgttagtaccatatataacataacagattaattgaggtttcgtcctcgggtaagtgtgtggcgtaatttttttctttctgattgttatt-tggggtatag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G006117_T02 (Zea mays), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttctta-atactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag-----
 ||||| ||||| |  |||   ||||| |||||||| |||||||| || |||||||| || || ||||| || ||||| ||||| |||||||||||||||||  |||     | | | |||    | | ||     |||    |       ||| ||     ||||  |||   |       ||||  ||| ||     
TTATTCCCTTCCGTTCTGCAAGCCAGATACCATAGTCGACAGTGCCGAAAATCTTGGGGAGGTACTTCGTGGCGATCGCATTGAGAACTCTCCTTATGTGgttagttccgtatataacataacagattaattgagattttgtcctcgggtatgtgtgtgacatatt--ttttccattctgcttgttatttggagtatag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G08130.1 (Glycine max), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatcct---tttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag
|||||| || |||||||| || ||  ||  |||  ||||||||||||| ||||| || |||||||| |||||||| || |||||||||||||| ||||||||  |||  | |  || | ||      | |||  |||| || | |   | |  | | |     |  | |  |  | | | |   || || || |||
CTATTCACTGCCTTATTGTCGGCCTAAACACATTTTTGACAGTGCAGAAAATCTAGGGGAAGTTCTCCGGGGTGACCGCATTGAAAACTCTCCCTATGTGgttggtttaaatctttcagac----aggttccagctttctacctttagtgtattatgtttcactactaaaatattgaaacattttgattcttccag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA02G36550.1 (Glycine max), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttag--tgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtt----tgttgcag
|||||| || ||||||||||| ||| ||  |||  | ||||||||||| || || || |||||||| ||||| ||||| |||||||||||||| ||||||||  |||    |  | |||  ||  |   | | |    ||    |||| |  |   |    || | || |     |  ||| || ||    | || |||
CTATTCACTGCCTTATTGCCGGCCAAAACACATTTTCGACAGTGCAGAAAACCTGGGGGAAGTTCTCCGGGGAGATCGCATTGAAAACTCTCCCTATGTGgttggtt----tattaaatctttcggacaggttccaactttccaccttatgtttagtatgtttcactactaaaatattgaaacttttaaatttttccag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA06G28090.1 (Glycine max), 5'ss of exon 2
CTATTCTCTTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag
|||||| || ||||| || | |||||    ||| ||||||||||| ||||||||||| ||||| ||  ||||||| || || |||||||||||||| |||||  |||| | || |  ||         || || |||| | ||| |||  | | | || ||    |  | |||| | |   || || ||  ||
CTATTCACTGCCTTACTGTCATCCAGGTCACATTGTTGACAGTGCTGAGAATCTTGGGGAAGTCCTGAGGGGTGACCGCATAGAAAACTCTCCTTACGTGgttggttaaatttttgcatc--------attcttctttct-tccatttagtatgttcaattacaaaaatactaaaacagtttgattcttcaag

upper sequence: Vv11s0037g00210.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA12G23900.1 (Glycine max), 5'ss of exon 1
-CTATTCTC--TTCCTTATTGCCGTCCAGAAACCATAGTTGACAGTGCAGAGAATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttagagttcttaatactttagtgatcctcctttatatccttttcctgtatgcagtttattagtttctaacagaagctgtttgttgcag
 ||| | |   | |||||||| | |||||    ||| || |||||||| ||||||||||| ||||| ||| ||||||| || || ||||||||||   | |||||  |||| | || |     | | | |  |||| |||     || |||  | | | || ||    |  | || | | |   || || ||  ||
CCTACTTTTGGTGCCTTATTGTCATCCAGGTCACATTGTGGACAGTGCTGAGAATCTTGGGGAAGTCCTTAGGGGTGACCGCATAGAAAACTCTC---ACGTGgttggttaaattttt----gcatcactcttccttctt-----ccatttagtatgttcaattccaaaaatactgaaacagtttggttcttcaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110713316|gb|EE089129.1|EE089129
EST:     ATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTG                         TTTAAAATGCGAGAACCACAGATGTGCAATGTTGTATGTCGTGTGGAGCTG
genomic: ATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttaga ... tttgttgcagTTTAAAATGCGAGAACCACAGATGTGCAATGTTGTATGTCGTATGGAGCTG
EST: gi|161716766|gb|FC067205.1|FC067205
EST:     ATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTG                         TTTAAAATGCGAGAACCACAGATGTGCAATGTTGTATGTCGTGTGGAGCTG
genomic: ATCTTGGTGAAGTTCTTCGGGGTGATCGTATTGAAAACTCTCCTTATGTGgtctgttaga ... tttgttgcagTTTAAAATGCGAGAACCACAGATGTGCAATGTTGTATGTCGTATGGAGCTG