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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTATGCAGCCGGATTGGGACATGTTCCATTCACTGCACTCAGCGGCTGAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccatctttctctatattctaaaatccaattcccattatttttacaattttaagttgctgacttttaagggtatttggttcttaacaacag

Basic information

species Vitis vinifera
transcript Vv11s0016g05770.t01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05770.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: AT5G20250.2 (Arabidopsis thaliana), 5'ss of exon 3
AGATTATGCAGCCGGATTGGGACATGTTCCATTCACTGCACTCAGCGGCTGAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccatctttctctatattctaaaatccaattcccattatttttacaattttaagttgctgacttttaagggtatttg-gttcttaaca-acag
|| |||||||||| || ||||| |||||||||||  ||||| | || || ||||| ||||| ||||| || |||||||| ||||| ||  |||| |||||||  |  |||    ||   || | ||     | | |   | |    |    |||  ||  |       ||  | | | |||| |||||||| | | ||
AGTTTATGCAGCCTGACTGGGATATGTTCCATTCCGTGCACCCTGCTGCAGAGTATCATGCCTCTGCTAGGGCCATCAGTGGTGGGCCTCTCTATGTCAGgtatcatcattcaactac-tagtatatctctctagttgaacttgcctgttgattgcaaacttacattgttacatgttgtttgtgttcttaatatatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110718557|gb|EE095526.1|EE095526
EST:     GAGTACCATGCATCCGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAG                         TGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
genomic: GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccat ... ttaacaacagTGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
EST: gi|110720334|gb|EE096164.1|EE096164
EST:     GAGTACCATGCATCCGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAG                         TGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
genomic: GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccat ... ttaacaacagTGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
EST: gi|37184787|gb|CF604141.1|CF604141
EST:     GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAG                         TGATGCCCCTGGGAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
genomic: GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccat ... ttaacaacagTGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
EST: gi|110698330|gb|EE075722.1|EE075722
EST:     GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAG                         TGATGCCCCTGGGAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC
genomic: GAGTACCATGCATCTGCCAGAGCCATCAGCGGTGGCCCCATCTACGTCAGgtccctccat ... ttaacaacagTGATGCCCCTGGTAAGCACAACTACGAACTCCTCAAGAAACTTGTCTTGCC