Sequence
atgc intronic sequence ATGC exonic sequenceAGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: LOC_Os06g07230.1 (Oryza sativa), 5'ss of exon 2
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
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TGATCCAAACAGCACATCTCCTGCAAAACCCGGTACTGGTCTTACAGTTGCTGTCAAAAGTTTGAAGCAGGATGCACTTCAAGGTCACAGAGAATGGGTGgtaagtatgt-gcttgtcctgtacatgt-gtttgtgtaggtagagttat----aacttacaaacataccgtatttgcag---------------------
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 4
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
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TGAGCCAAACAGCACAGCTCCTGCAAAACCTGGCACAGGGGTTACTGTGGCAGTCAAAAGTTTGAAGCCAGATGCGCCTCAAGGTCATAGAGAATGGGTGgtaagtattgtatgtcatttttatttttgaatggagt------------------gttgtaggtatggttt-ttaaaaataatcacatttccag------
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G014596_T01 (Zea mays), 5'ss of exon 2
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaata-tgacatgttaatgataggcattttcccaaacgcag
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TGAGCCAAACAGCACTGCTCCTGCAAAACCTGGCACAGGGGTTACTGTGGCAGTAAAAAGTTTGAAGCCAGATGCGCTTCAAGGTCATAGAGAATGGGTGgtaagtattgtatgtcatttttatttttgaatggagt----gttgtaggtattgttttaaaaataatcatatttccatg-cag------------------
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G410191_T02 (Zea mays), 5'ss of exon 6
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
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TGAGCCAAACAGCACTGCTCCTGCAAAACCTGGCACGGGGGTTACTGTGGCAGTCAAAAGTTTGAAGCCAGATGCACTTCAAGGTCATAGAGAATGGGTGgtaagtattgtatgtcatttttatttttgaatggagt------------------gttgtaggtatggttt-ttaaaaataatcagatttccag------
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GRMZM2G410191_T01 (Zea mays), 5'ss of exon 6
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattat-ttactttgggtt---agtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
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TGAGCCAAACAGCACTGCTCCTGCAAAACCTGGCACGGGGGTTACTGTGGCAGTCAAAAGTTTGAAGCCAGATGCACTTCAAGGTCATAGAGAATGGGTGgtaagtattgtatgtcatttttatttttgaatggagtgttgtaggtatggtttttaaaaataatcagatttccaggcagaagttg---actttctgggacagt-
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 2
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattattt---actttgggttagtagattgac-ttg-aaaatgttagtaagaggctac-aaatatgacatgttaatgata-ggcattttcccaaacgcag
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TGAGGAAGATGGAACGGCACCGGCGAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGgttagtaaaatatcttctgctttgggttagtagattggtgttgtaaagagttgtttaggatatgctggagattagattgtaacaacatggcattttgttga-tgcag
upper sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA13G22790.1 (Glycine max), 5'ss of exon 2
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattat---ttactttgggttagtagattgac-ttg-aaaatgttagtaagaggctac-aaatatgacatgttaatgataggcattttcccaaacgcag
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TGAGGAAGATGGAACGGCGCCAGCGAAACCCGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAAGGCCATAGAGAATGGGTGgttagtaaaatatcttctgctttgggttagtagattggtgttgtaaagagttgtttaggatatgctggagattagattgtaacat--ggcattttgttga-tgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856918|gb|DT005973.1|DT005973EST: CTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTG GCTGAGGTAGGCTTCCTTGGACAGCTTCACCACCCTAATCTTGTTAAACTT
genomic: CTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagat ... ccaaacgcagGCTGAGGTAGGCTTCCTTGGACAGCTTCACCACCCTAATCTTGTTAAACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGGAGAATGGGACAGCACCTGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGTTTGAAGCCAGATGGTCTTCAAGGCCATAGAGAATGGGTGgttagtagattatttactttgggttagtagattgacttgaaaatgttagtaagaggctacaaatatgacatgttaatgataggcattttcccaaacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG