1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTGGATTGGAACATTTGAAGGACACAAGGGTGCAGTATGGAGTTGCTGCTTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatctaaaacccattttagtaatttatttaatgcatttgcatactttatattatcctgggatgacttgctggaagatcttctcataggggttaag...
species | Vitis vinifera |
transcript | Vv11s0016g04710.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGC GAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAEST: gi|161716787|gb|FC069173.1|FC069173
genomic: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatct ... gtgcatgtagGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAA
EST: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGC GAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAEST: gi|110702782|gb|EE079052.1|EE079052
genomic: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatct ... gtgcatgtagGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAA
EST: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGC GAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAAEST: gi|161718203|gb|FC065673.1|FC065673
genomic: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatct ... gtgcatgtagGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAA
EST: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGC TAAAATATGGGATGCTTTAGCAGGGGATGAATTGCACTCATTTGAACACAA
genomic: TTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatct ... gtgcatgtagGAAAATATGGGATGCTTTAACAGGGGATGAATTGCACTCATTTGAACACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGATTGGAACATTTGAAGGACACAAGGGTGCAGTATGGAGTTGCTGCTTGGATACGAATGCTTTACGTGCTGCATCTGGCTCAGCGGACTTCACTGCgtatgcatctaaaacccattttagtaatttatttaatgcatttgcatactttatattatcctgggatgacttgctggaagatcttctcataggggttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagat