Sequence
atgc intronic sequence ATGC exonic sequenceAAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaatttggattattattactgcactattttaatttttatccttctaggaagtcatgttaggatgaaaagtgtcttgcttttgtgctacatttcaagtag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA09G32390.1 (Glycine max), 5'ss of exon 2
AAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaa-----------tttggattattattactgcacta-ttttaatttttatccttctaggaagtcatgttaggatgaaaagtgtcttgcttttgtgctacatttcaagtag--------------------------------------------------------
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AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgttggtacctctggttttagctttctatcacaaaattccttttaaattctgtttagttggtccatctt-ttctgctgagagtgggctaggcaccaaccaccaatactattgtgtgttgtggcataatgcttttggtggaggcggttttgatggttatttgcactacag
upper sequence: Vv11s0016g03880.t01 (Vitis vinifera), 5'ss of exon 2
lower sequence: GLYMA07G09420.1 (Glycine max), 5'ss of exon 2
AAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaatttggattattattactgcactattttaatttttatccttctaggaagtcatgttaggatgaaaagtgtcttgcttt-----tgtgctacatttcaagtag-------------------------------------------------------------
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AAGCATCTTGTTTCTTTGGTTGGATACTGCATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAACACATTGGAATTCCATTTGCATGgtttgtacctctggttttagctttctatcacaagatt---cctttca--aaattctgtttagttggtccatcttttctgctgaaagtgggctaggcaccaactaccaatattattgtggcataatgcttttggtggaagcggttttgatggttatttgcactgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110712846|gb|EE088247.1|EE088247EST: GCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATG GAAAAGGACGACCTACTATGGATTGGTCCACAAGACTGAAAATTGCTTTAG
genomic: GCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaatttgga ... catattgcagGAAAAGGACGACCTACTATGGATTGGTCCACAAGACTGAAAATTGCTTTAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACATCTTGTAACCTTAGCTGGATATTGCATCACTGGATCACATAGACTGCTTGTTTATGAGTTTGTTCCGAACAACACCTTGGAGTTTCATTTACATGgtaatttggattattattactgcactattttaatttttatccttctaggaagtcatgttaggatgaaaagtgtcttgcttttgtgctacatttcaagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa