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TCACAATTGGGCATGTGGGGACGTCAAGGTGAAGCTTCCGTGACATACAAGCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcatcagttgtttggaccagtaaaagttgtgtttgttatattgttatcaatgattctgtataggctctgttgtggaactgagcggtctaatata...
species | Vitis vinifera |
transcript | Vv11s0016g03660.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAG CTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCEST: gi|71881826|gb|DT030881.1|DT030881
genomic: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcat ... tgtcctttagCTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
EST: GCGTGTGTCATCAAAAGATTATACGAAAGTTGACATGGAAGAAAGTTCAG CTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCEST: gi|71860519|gb|DT009574.1|DT009574
genomic: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcat ... tgtcctttagCTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
EST: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAG CTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCEST: gi|71861991|gb|DT011046.1|DT011046
genomic: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcat ... tgtcctttagCTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
EST: GCGTGTGTCATCAAGAGATAATACAAAAGTTGACATGGAGGAAAGTTCAG CTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCEST: gi|161714953|gb|FC064236.1|FC064236
genomic: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcat ... tgtcctttagCTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
EST: GCGTGTGTCATCAAAAGATTATACGAAAGTTGACATGGAAGAAAGTTCAG CTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
genomic: GCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcat ... tgtcctttagCTCTTTTCCAGAACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCACAATTGGGCATGTGGGGACGTCAAGGTGAAGCTTCCGTGACATACAAGCGTGTGTCATCAAGAGATAATACGAAAGTTGACATGGAGGAAAGTTCAGgtgacttcatcagttgtttggaccagtaaaagttgtgtttgttatattgttatcaatgattctgtataggctctgttgtggaactgagcggtctaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaa