1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCCCCCAAGTCTTGTGTGACAAGTTTCAGCAGCAACATGCTAGATTTTTCTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGgtatagacagtggccttttcatatatatattttttcttatcttaggaattcttaatattcttaatcttctagggttcggactatagcttttgagttttca...
species | Vitis vinifera |
transcript | Vv11s0016g03560.t01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAG TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCEST: gi|71871899|gb|DT020954.1|DT020954
genomic: CTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGgtatagacag ... tcttttcaagTGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTC
EST: CTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAG TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTEST: gi|161720450|gb|FC070562.1|FC070562
genomic: CTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGgtatagacag ... tcttttcaagTGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCT
EST: CTAGCAACAAAGCCGATGTGAAGCACCCACAACCGGATCGTTCTTCAGAG TGTAACAGCACTGCAACTGGTG
genomic: CTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGgtatagacag ... tcttttcaagTGTAACAGCACTGCAACTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCCCCAAGTCTTGTGTGACAAGTTTCAGCAGCAACATGCTAGATTTTTCTAGCAACAAAGCCGATGTGAAGCACCCACAGCCGGATCGTTCTTCAGAGgtatagacagtggccttttcatatatatattttttcttatcttaggaattcttaatattcttaatcttctagggttcggactatagcttttgagttttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC